miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15739 3' -62.9 NC_004065.1 + 33140 0.66 0.730832
Target:  5'- cGGCCGugAaggGCagggggaugCCGUUGaCGCGCGCg- -3'
miRNA:   3'- -CCGGCugU---CGa--------GGCAGC-GCGCGCGgc -5'
15739 3' -62.9 NC_004065.1 + 34471 0.66 0.756707
Target:  5'- cGGCgCGAUGGCggagUCUGaccuguucauagaUCGCGcCGCGCUGg -3'
miRNA:   3'- -CCG-GCUGUCG----AGGC-------------AGCGC-GCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 34924 0.69 0.548378
Target:  5'- cGCCGGCAGCugacgccccugggggUCUG-CGcCGCGCGCUc -3'
miRNA:   3'- cCGGCUGUCG---------------AGGCaGC-GCGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 36281 0.67 0.656831
Target:  5'- cGGUCGGCAGagCCGagGCGaugGCGCCu -3'
miRNA:   3'- -CCGGCUGUCgaGGCagCGCg--CGCGGc -5'
15739 3' -62.9 NC_004065.1 + 41279 0.69 0.572405
Target:  5'- cGCCcugGugGGCUUCGcCGcCGUGCGCCu -3'
miRNA:   3'- cCGG---CugUCGAGGCaGC-GCGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 41350 0.66 0.739832
Target:  5'- cGGCCuGACGa--CCGUCGUcucccgccGCGCGCCc -3'
miRNA:   3'- -CCGG-CUGUcgaGGCAGCG--------CGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 42053 0.67 0.693256
Target:  5'- cGGCCG-CAGCUgcacccucucccgCUGUaCGCGguacagaGCGCCGa -3'
miRNA:   3'- -CCGGCuGUCGA-------------GGCA-GCGCg------CGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 42076 0.66 0.757586
Target:  5'- uGGCUGACcucGCUgaUGU-GCGCGuCGCCGg -3'
miRNA:   3'- -CCGGCUGu--CGAg-GCAgCGCGC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 50741 0.66 0.757586
Target:  5'- uGCaCGGCGGCUCCGU-GUGguCGCGUgGa -3'
miRNA:   3'- cCG-GCUGUCGAGGCAgCGC--GCGCGgC- -5'
15739 3' -62.9 NC_004065.1 + 52540 0.71 0.439449
Target:  5'- -cCCGGCGGCcCCGcCGUGCGCccccGCCGa -3'
miRNA:   3'- ccGGCUGUCGaGGCaGCGCGCG----CGGC- -5'
15739 3' -62.9 NC_004065.1 + 59149 0.7 0.490773
Target:  5'- aGGCgaCGACGGCgagagUCCGaUCGgGCGCGCgGc -3'
miRNA:   3'- -CCG--GCUGUCG-----AGGC-AGCgCGCGCGgC- -5'
15739 3' -62.9 NC_004065.1 + 59969 0.72 0.42303
Target:  5'- aGGuuGGCGGCUUCGUCG-GCcgaGCaGCCGg -3'
miRNA:   3'- -CCggCUGUCGAGGCAGCgCG---CG-CGGC- -5'
15739 3' -62.9 NC_004065.1 + 61084 0.68 0.647434
Target:  5'- uGUCGGCGcgcuGCUCugCGUCGCGUaCGCCGu -3'
miRNA:   3'- cCGGCUGU----CGAG--GCAGCGCGcGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 61390 0.68 0.591056
Target:  5'- cGCCGcgcCGGCUCCGccCGCGgcaccaGCGCCa -3'
miRNA:   3'- cCGGCu--GUCGAGGCa-GCGCg-----CGCGGc -5'
15739 3' -62.9 NC_004065.1 + 61448 0.77 0.192196
Target:  5'- gGGCCGGCccgacccGCUCCGUgaUGCGCuGCGCCa -3'
miRNA:   3'- -CCGGCUGu------CGAGGCA--GCGCG-CGCGGc -5'
15739 3' -62.9 NC_004065.1 + 61455 0.68 0.628617
Target:  5'- gGGCCGAgAcGCccgCUGUCGC-CGCcGCCGc -3'
miRNA:   3'- -CCGGCUgU-CGa--GGCAGCGcGCG-CGGC- -5'
15739 3' -62.9 NC_004065.1 + 61823 0.67 0.674633
Target:  5'- cGGaCuCGACGGCgUCGUCaaacaagGCGuCGCGCCGc -3'
miRNA:   3'- -CC-G-GCUGUCGaGGCAG-------CGC-GCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 63482 0.67 0.675567
Target:  5'- aGCCGcCAGgCgCCGUCGCGCa-GCCa -3'
miRNA:   3'- cCGGCuGUC-GaGGCAGCGCGcgCGGc -5'
15739 3' -62.9 NC_004065.1 + 65335 0.67 0.696961
Target:  5'- cGGCggCGGCAGCagcugcgggugggUCgGUCGgaucgaccugggcgaCGCGCGCCGc -3'
miRNA:   3'- -CCG--GCUGUCG-------------AGgCAGC---------------GCGCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 65443 0.7 0.4996
Target:  5'- cGGCCGugGugGCUCUGgagCGCGaagcggucgGCGCCGc -3'
miRNA:   3'- -CCGGCugU--CGAGGCa--GCGCg--------CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.