miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15739 3' -62.9 NC_004065.1 + 229654 0.71 0.432015
Target:  5'- cGGCCGGCGGCaguggcaggugggcgUCGggGCGCGCGuCCGc -3'
miRNA:   3'- -CCGGCUGUCGa--------------GGCagCGCGCGC-GGC- -5'
15739 3' -62.9 NC_004065.1 + 229462 0.69 0.553897
Target:  5'- uGCCGcCAGCcCCGUUGCGCgaacaggggGCGCUc -3'
miRNA:   3'- cCGGCuGUCGaGGCAGCGCG---------CGCGGc -5'
15739 3' -62.9 NC_004065.1 + 228474 0.67 0.703429
Target:  5'- cGCCGuCAGCUUacacaccaCGUCGCguguaggcuuGCGUGCCc -3'
miRNA:   3'- cCGGCuGUCGAG--------GCAGCG----------CGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 227914 0.68 0.628617
Target:  5'- aGGCCGACAucaucuucccacGCUCgGcauaCGCGCGCaGCgCGu -3'
miRNA:   3'- -CCGGCUGU------------CGAGgCa---GCGCGCG-CG-GC- -5'
15739 3' -62.9 NC_004065.1 + 222839 0.74 0.319148
Target:  5'- cGGCC-ACAGCUCgGUCGUcauugacaGCGCGuCCGc -3'
miRNA:   3'- -CCGGcUGUCGAGgCAGCG--------CGCGC-GGC- -5'
15739 3' -62.9 NC_004065.1 + 210090 0.66 0.721761
Target:  5'- uGCCGACGGUgUCCGUCGUaaccacCGCCa -3'
miRNA:   3'- cCGGCUGUCG-AGGCAGCGcgc---GCGGc -5'
15739 3' -62.9 NC_004065.1 + 209314 0.67 0.694183
Target:  5'- cGCCGuCGGUgCCGUCGUGUGCuaCu -3'
miRNA:   3'- cCGGCuGUCGaGGCAGCGCGCGcgGc -5'
15739 3' -62.9 NC_004065.1 + 208023 0.73 0.33275
Target:  5'- uGCCGGCGGCgaugaCCGUCG-GCGUgGCCGu -3'
miRNA:   3'- cCGGCUGUCGa----GGCAGCgCGCG-CGGC- -5'
15739 3' -62.9 NC_004065.1 + 207657 0.66 0.748752
Target:  5'- cGGCCGGCucccuCUCUGUCGU-CGuUGCCGu -3'
miRNA:   3'- -CCGGCUGuc---GAGGCAGCGcGC-GCGGC- -5'
15739 3' -62.9 NC_004065.1 + 207511 0.69 0.553897
Target:  5'- cGGCgCGAUAGCggUCGUCGguccuccucgcCGCGCGCUc -3'
miRNA:   3'- -CCG-GCUGUCGa-GGCAGC-----------GCGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 205539 0.66 0.757586
Target:  5'- gGGCCGGCGGCggugCCaUCuaCGCGC-CCa -3'
miRNA:   3'- -CCGGCUGUCGa---GGcAGc-GCGCGcGGc -5'
15739 3' -62.9 NC_004065.1 + 204794 0.69 0.581715
Target:  5'- aGCCGACucgaucccgGGCUUCGUCG-GCaucgGCGCCa -3'
miRNA:   3'- cCGGCUG---------UCGAGGCAGCgCG----CGCGGc -5'
15739 3' -62.9 NC_004065.1 + 204479 0.79 0.164961
Target:  5'- gGGCCGACGccgacgccgucugucGCUuuGUCGUGCGCGCg- -3'
miRNA:   3'- -CCGGCUGU---------------CGAggCAGCGCGCGCGgc -5'
15739 3' -62.9 NC_004065.1 + 203511 0.68 0.600422
Target:  5'- uGCCGGCgGGgUCCGUCGCGUGacauGUCu -3'
miRNA:   3'- cCGGCUG-UCgAGGCAGCGCGCg---CGGc -5'
15739 3' -62.9 NC_004065.1 + 202734 0.7 0.482019
Target:  5'- cGGCCGuuuCGGCUCgUGUCcCGaGCGCCGu -3'
miRNA:   3'- -CCGGCu--GUCGAG-GCAGcGCgCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 202383 0.68 0.638027
Target:  5'- gGGCCG-CAGCacccCCGcgcaGCGCaGCGCCu -3'
miRNA:   3'- -CCGGCuGUCGa---GGCag--CGCG-CGCGGc -5'
15739 3' -62.9 NC_004065.1 + 200887 0.74 0.305968
Target:  5'- gGGCuCGGCuGC-CCGUCGCGCuggGCGaCCGg -3'
miRNA:   3'- -CCG-GCUGuCGaGGCAGCGCG---CGC-GGC- -5'
15739 3' -62.9 NC_004065.1 + 200319 0.67 0.675567
Target:  5'- aGGCagaGGuacCAGC-CCGUCGgG-GCGCCGa -3'
miRNA:   3'- -CCGg--CU---GUCGaGGCAGCgCgCGCGGC- -5'
15739 3' -62.9 NC_004065.1 + 199520 0.66 0.739832
Target:  5'- cGGCCGccacgugcgcGCAGCcgggcgccUCCaGcCGgGCGCGCCc -3'
miRNA:   3'- -CCGGC----------UGUCG--------AGG-CaGCgCGCGCGGc -5'
15739 3' -62.9 NC_004065.1 + 199183 0.66 0.747864
Target:  5'- uGGUCGucguCGGCUUCGUCGagggucgcgaggaCGCGCaCCGc -3'
miRNA:   3'- -CCGGCu---GUCGAGGCAGC-------------GCGCGcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.