miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15739 5' -56 NC_004065.1 + 69884 0.66 0.963697
Target:  5'- gUCGGaCUCGUUCuccucGCAGACgCCGUCGGu -3'
miRNA:   3'- aGGUC-GAGCAGGc----UGUCUG-GGUAGUC- -5'
15739 5' -56 NC_004065.1 + 116720 0.66 0.963697
Target:  5'- gUCCGGCgcgCGagCGGCGucGCCCGUCAu -3'
miRNA:   3'- -AGGUCGa--GCagGCUGUc-UGGGUAGUc -5'
15739 5' -56 NC_004065.1 + 90107 0.66 0.963697
Target:  5'- gUCC-GUUCGU-CGACcGACCCcUCGGg -3'
miRNA:   3'- -AGGuCGAGCAgGCUGuCUGGGuAGUC- -5'
15739 5' -56 NC_004065.1 + 191781 0.66 0.959996
Target:  5'- gUCCAGCUCagggccgagaacaGUCCGAUAcacaccccGCCCGUCc- -3'
miRNA:   3'- -AGGUCGAG-------------CAGGCUGUc-------UGGGUAGuc -5'
15739 5' -56 NC_004065.1 + 151323 0.66 0.956781
Target:  5'- uUCCGcGCUCaaCCGcaGCAGAUCCGcUCAGa -3'
miRNA:   3'- -AGGU-CGAGcaGGC--UGUCUGGGU-AGUC- -5'
15739 5' -56 NC_004065.1 + 131582 0.66 0.956781
Target:  5'- aCCAGgUCGUCCGACuGGuuguUCCGUUu- -3'
miRNA:   3'- aGGUCgAGCAGGCUGuCU----GGGUAGuc -5'
15739 5' -56 NC_004065.1 + 162928 0.66 0.956781
Target:  5'- gUCCAGCgacgucgUGUCCaGCAccggaucgauGCCCAUCAGg -3'
miRNA:   3'- -AGGUCGa------GCAGGcUGUc---------UGGGUAGUC- -5'
15739 5' -56 NC_004065.1 + 212036 0.66 0.956781
Target:  5'- cUCCAGCUCc-CCGAC--ACCCAagAGg -3'
miRNA:   3'- -AGGUCGAGcaGGCUGucUGGGUagUC- -5'
15739 5' -56 NC_004065.1 + 136577 0.66 0.949017
Target:  5'- uUCCGGCaUCGUgaCCGugGGGCUCAg--- -3'
miRNA:   3'- -AGGUCG-AGCA--GGCugUCUGGGUaguc -5'
15739 5' -56 NC_004065.1 + 196386 0.66 0.944809
Target:  5'- gCCGGCUCGUCa-ACGaGCUCAUCGa -3'
miRNA:   3'- aGGUCGAGCAGgcUGUcUGGGUAGUc -5'
15739 5' -56 NC_004065.1 + 180996 0.66 0.944809
Target:  5'- gUCCGGCUCGUC-GACAuGACCa----- -3'
miRNA:   3'- -AGGUCGAGCAGgCUGU-CUGGguaguc -5'
15739 5' -56 NC_004065.1 + 133482 0.67 0.940379
Target:  5'- gUCCAGCgacuccUCGUCCagcuccuCGGACUCGUCGu -3'
miRNA:   3'- -AGGUCG------AGCAGGcu-----GUCUGGGUAGUc -5'
15739 5' -56 NC_004065.1 + 119038 0.67 0.940379
Target:  5'- gCCGuGCUCGUCaacaCGACGcucuGACCCGUCc- -3'
miRNA:   3'- aGGU-CGAGCAG----GCUGU----CUGGGUAGuc -5'
15739 5' -56 NC_004065.1 + 197700 0.67 0.935726
Target:  5'- gUCgAGCUCGUCaucucgGACAagGAUUCGUCGGg -3'
miRNA:   3'- -AGgUCGAGCAGg-----CUGU--CUGGGUAGUC- -5'
15739 5' -56 NC_004065.1 + 176226 0.67 0.935726
Target:  5'- aCCGGCUC--UCGGCGGACCgCG-CAGa -3'
miRNA:   3'- aGGUCGAGcaGGCUGUCUGG-GUaGUC- -5'
15739 5' -56 NC_004065.1 + 82115 0.67 0.930849
Target:  5'- cUCCAGCUgCGcCCGGCuGACgUAUCc- -3'
miRNA:   3'- -AGGUCGA-GCaGGCUGuCUGgGUAGuc -5'
15739 5' -56 NC_004065.1 + 200085 0.67 0.930849
Target:  5'- gCCAGCUCGUCgaugcuCAGACUCAUg-- -3'
miRNA:   3'- aGGUCGAGCAGgcu---GUCUGGGUAguc -5'
15739 5' -56 NC_004065.1 + 178107 0.67 0.925747
Target:  5'- cUCAGuCUCGUCCG-CAGuCUCAgcgUCAGg -3'
miRNA:   3'- aGGUC-GAGCAGGCuGUCuGGGU---AGUC- -5'
15739 5' -56 NC_004065.1 + 183105 0.67 0.920419
Target:  5'- gUCCAGgUCGUCguCGu--GACCCAUCGc -3'
miRNA:   3'- -AGGUCgAGCAG--GCuguCUGGGUAGUc -5'
15739 5' -56 NC_004065.1 + 66550 0.67 0.920419
Target:  5'- aCCGGCgcCG-CCGACGGAgcucgagcuaCCCAUCGa -3'
miRNA:   3'- aGGUCGa-GCaGGCUGUCU----------GGGUAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.