miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1574 3' -58 NC_001347.2 + 134603 0.66 0.930946
Target:  5'- aCGAGCGagaGAACCGUCgagaagGUCACCAa- -3'
miRNA:   3'- -GCUCGCgg-UUUGGCGGg-----CAGUGGUgg -5'
1574 3' -58 NC_001347.2 + 1504 0.66 0.930946
Target:  5'- uGGGCGCCGGguuCCGCgUGUUcguguACgACCu -3'
miRNA:   3'- gCUCGCGGUUu--GGCGgGCAG-----UGgUGG- -5'
1574 3' -58 NC_001347.2 + 195852 0.66 0.930946
Target:  5'- aGGcGUGCCcuuGCCGCCCGau-CCGCa -3'
miRNA:   3'- gCU-CGCGGuu-UGGCGGGCaguGGUGg -5'
1574 3' -58 NC_001347.2 + 11774 0.66 0.930946
Target:  5'- -aGGCuGCCAAguGCCGCUCcaCGCCGCg -3'
miRNA:   3'- gcUCG-CGGUU--UGGCGGGcaGUGGUGg -5'
1574 3' -58 NC_001347.2 + 27054 0.66 0.930946
Target:  5'- uCGGGCGCaucacCCGCcucauggacCCGcCGCUACCg -3'
miRNA:   3'- -GCUCGCGguuu-GGCG---------GGCaGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 94983 0.66 0.930946
Target:  5'- aCGAGCGCgCAGccGCUGCCCagaUCACaCAg- -3'
miRNA:   3'- -GCUCGCG-GUU--UGGCGGGc--AGUG-GUgg -5'
1574 3' -58 NC_001347.2 + 141747 0.66 0.930946
Target:  5'- -aGGUGCUAGuCCGCgguucUCGUCGCCcGCCg -3'
miRNA:   3'- gcUCGCGGUUuGGCG-----GGCAGUGG-UGG- -5'
1574 3' -58 NC_001347.2 + 153286 0.66 0.930946
Target:  5'- aCGuAGCGCCGuucACCG-UCGaCGCCACUu -3'
miRNA:   3'- -GC-UCGCGGUu--UGGCgGGCaGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 77875 0.66 0.930946
Target:  5'- cCGAGCGCCugggcGCCGUgCG-CGuaGCCa -3'
miRNA:   3'- -GCUCGCGGuu---UGGCGgGCaGUggUGG- -5'
1574 3' -58 NC_001347.2 + 126005 0.66 0.930456
Target:  5'- -aAGUGCuCGGACucgcggcggguggCGCCCGUCuuCGCCg -3'
miRNA:   3'- gcUCGCG-GUUUG-------------GCGGGCAGugGUGG- -5'
1574 3' -58 NC_001347.2 + 24574 0.66 0.927978
Target:  5'- uGAGCGaCCGguucucgcucagcgaAACCGgcaCCCG-CGCUGCCg -3'
miRNA:   3'- gCUCGC-GGU---------------UUGGC---GGGCaGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 225578 0.66 0.925956
Target:  5'- -cGGUGaCUuAGCCGCCCGUgGCCGg- -3'
miRNA:   3'- gcUCGC-GGuUUGGCGGGCAgUGGUgg -5'
1574 3' -58 NC_001347.2 + 138808 0.66 0.925956
Target:  5'- --cGCaGCCAGACCGCagugGUgGCCACg -3'
miRNA:   3'- gcuCG-CGGUUUGGCGgg--CAgUGGUGg -5'
1574 3' -58 NC_001347.2 + 195243 0.66 0.925956
Target:  5'- uGAGCaGCCAuacAUCGCCCGcgUACgACg -3'
miRNA:   3'- gCUCG-CGGUu--UGGCGGGCa-GUGgUGg -5'
1574 3' -58 NC_001347.2 + 81638 0.66 0.925956
Target:  5'- -cGGCGCC--GCCGCCgGccUCGgUACCg -3'
miRNA:   3'- gcUCGCGGuuUGGCGGgC--AGUgGUGG- -5'
1574 3' -58 NC_001347.2 + 88262 0.66 0.925956
Target:  5'- aGAGCGCgGcguaCGCUgGUCACguCGCCg -3'
miRNA:   3'- gCUCGCGgUuug-GCGGgCAGUG--GUGG- -5'
1574 3' -58 NC_001347.2 + 119723 0.66 0.925956
Target:  5'- -cAGCaCCGuuaCGCCCuGUCugCACCa -3'
miRNA:   3'- gcUCGcGGUuugGCGGG-CAGugGUGG- -5'
1574 3' -58 NC_001347.2 + 91133 0.66 0.925445
Target:  5'- aCGAGCGCCucaaGAGCgCGCUCGauaaacugacguuUCGCCcgugcuCCg -3'
miRNA:   3'- -GCUCGCGG----UUUG-GCGGGC-------------AGUGGu-----GG- -5'
1574 3' -58 NC_001347.2 + 22170 0.66 0.925445
Target:  5'- uGAGuCGCCGAcggucaccaucguGCCGCuCCaUCGCaGCCa -3'
miRNA:   3'- gCUC-GCGGUU-------------UGGCG-GGcAGUGgUGG- -5'
1574 3' -58 NC_001347.2 + 178876 0.66 0.92075
Target:  5'- aGAGCGa---GuuGuCCuCGUCGCCGCCg -3'
miRNA:   3'- gCUCGCgguuUggC-GG-GCAGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.