miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1574 3' -58 NC_001347.2 + 188781 1.13 0.001953
Target:  5'- aCGAGCGCCAAACCGCCCGUCACCACCg -3'
miRNA:   3'- -GCUCGCGGUUUGGCGGGCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 225847 0.83 0.156959
Target:  5'- -cAGCGCCAccACCGCugCCGUCGCCACCg -3'
miRNA:   3'- gcUCGCGGUu-UGGCG--GGCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 116669 0.79 0.275391
Target:  5'- -cGGCGCC--GCCG-CCGUCGCCACCu -3'
miRNA:   3'- gcUCGCGGuuUGGCgGGCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 15560 0.79 0.300976
Target:  5'- cCGAGCGCgAGGCCGCUgGUCAUCAg- -3'
miRNA:   3'- -GCUCGCGgUUUGGCGGgCAGUGGUgg -5'
1574 3' -58 NC_001347.2 + 92384 0.78 0.335486
Target:  5'- -aGGCGCCGGcGCCGCCuagCGUCACUGCCu -3'
miRNA:   3'- gcUCGCGGUU-UGGCGG---GCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 44348 0.78 0.341996
Target:  5'- cCGAGCGCCGAccgaccaGCCGgCCGauUCGCCcGCCg -3'
miRNA:   3'- -GCUCGCGGUU-------UGGCgGGC--AGUGG-UGG- -5'
1574 3' -58 NC_001347.2 + 68032 0.77 0.38059
Target:  5'- gGAGUGCUGAccGCCGCucCCGcCGCCGCCa -3'
miRNA:   3'- gCUCGCGGUU--UGGCG--GGCaGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 20430 0.77 0.386903
Target:  5'- gGuGCGCCGcagcggcuuuguGCCGagaCCGUCGCCACCa -3'
miRNA:   3'- gCuCGCGGUu-----------UGGCg--GGCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 189869 0.76 0.395694
Target:  5'- aGcGCGCCGggUCGCCUGUCcggcagcagccggGCCGCCu -3'
miRNA:   3'- gCuCGCGGUuuGGCGGGCAG-------------UGGUGG- -5'
1574 3' -58 NC_001347.2 + 191183 0.76 0.402168
Target:  5'- aGGGCGCCGccuccuccaaccccGcaacGCCGCUCGgagCACCGCCg -3'
miRNA:   3'- gCUCGCGGU--------------U----UGGCGGGCa--GUGGUGG- -5'
1574 3' -58 NC_001347.2 + 127140 0.76 0.404613
Target:  5'- gGAGCGaCC--GCUGCCCGUCuACCGCg -3'
miRNA:   3'- gCUCGC-GGuuUGGCGGGCAG-UGGUGg -5'
1574 3' -58 NC_001347.2 + 163622 0.76 0.412831
Target:  5'- -cAGCGCCGAGCCgcggcuGCCCGggUCGCgCACCa -3'
miRNA:   3'- gcUCGCGGUUUGG------CGGGC--AGUG-GUGG- -5'
1574 3' -58 NC_001347.2 + 128847 0.76 0.412831
Target:  5'- gCGAGCGCgAAcGCCgcGCCCGUCGCgCACg -3'
miRNA:   3'- -GCUCGCGgUU-UGG--CGGGCAGUG-GUGg -5'
1574 3' -58 NC_001347.2 + 85982 0.76 0.420314
Target:  5'- gCGAGcCGCCGccacccgAACCGUCCGcCGCCGCg -3'
miRNA:   3'- -GCUC-GCGGU-------UUGGCGGGCaGUGGUGg -5'
1574 3' -58 NC_001347.2 + 118188 0.76 0.429571
Target:  5'- --cGCGCCAGcccCCGCCgcgcauUGUCACCGCCg -3'
miRNA:   3'- gcuCGCGGUUu--GGCGG------GCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 63137 0.75 0.445838
Target:  5'- gGAGUGCCcgucgccgcAAACCccgucauGCCCGcCACCGCCa -3'
miRNA:   3'- gCUCGCGG---------UUUGG-------CGGGCaGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 131719 0.75 0.464211
Target:  5'- gGAGaCGac-GACCGgCCGUCGCCGCCg -3'
miRNA:   3'- gCUC-GCgguUUGGCgGGCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 158032 0.75 0.464211
Target:  5'- gCGGGCGCCGGACagcagGCgCGUCAcguagagcCCACCa -3'
miRNA:   3'- -GCUCGCGGUUUGg----CGgGCAGU--------GGUGG- -5'
1574 3' -58 NC_001347.2 + 31128 0.74 0.509458
Target:  5'- -cGGCGuCCAGGCUGCCCugGUUGCCGCUg -3'
miRNA:   3'- gcUCGC-GGUUUGGCGGG--CAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 18759 0.74 0.518734
Target:  5'- gCGAGUGUCGguuggaggAGCUGCCCGUCuguCACCa -3'
miRNA:   3'- -GCUCGCGGU--------UUGGCGGGCAGug-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.