miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1574 3' -58 NC_001347.2 + 721 0.72 0.614327
Target:  5'- -cGGCGCCAGcacgcGCCGUgcaCGUCGCUGCCu -3'
miRNA:   3'- gcUCGCGGUU-----UGGCGg--GCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 902 0.7 0.72982
Target:  5'- --cGCGCCcc-CCGCCCcuugGUCGCgGCCg -3'
miRNA:   3'- gcuCGCGGuuuGGCGGG----CAGUGgUGG- -5'
1574 3' -58 NC_001347.2 + 1345 0.67 0.87148
Target:  5'- uGGGCGCgaCGGACCuGCgucaaCUGUCGCCGCg -3'
miRNA:   3'- gCUCGCG--GUUUGG-CG-----GGCAGUGGUGg -5'
1574 3' -58 NC_001347.2 + 1504 0.66 0.930946
Target:  5'- uGGGCGCCGGguuCCGCgUGUUcguguACgACCu -3'
miRNA:   3'- gCUCGCGGUUu--GGCGgGCAG-----UGgUGG- -5'
1574 3' -58 NC_001347.2 + 1843 0.69 0.77546
Target:  5'- -cGGCGCCGcACC-CCgCGUCGCUGCUg -3'
miRNA:   3'- gcUCGCGGUuUGGcGG-GCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 5772 0.68 0.842084
Target:  5'- -cGGUGU--AACCGCCgcaucUGUCGCCGCCa -3'
miRNA:   3'- gcUCGCGguUUGGCGG-----GCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 6113 0.7 0.72982
Target:  5'- uGGGUGCgUAGACUGCaguuacucUCGUCACCGCUa -3'
miRNA:   3'- gCUCGCG-GUUUGGCG--------GGCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 6391 0.69 0.79296
Target:  5'- cCGGGCcuGCCAcugGACCGCCaCGUauuCCAgCCa -3'
miRNA:   3'- -GCUCG--CGGU---UUGGCGG-GCAgu-GGU-GG- -5'
1574 3' -58 NC_001347.2 + 11774 0.66 0.930946
Target:  5'- -aGGCuGCCAAguGCCGCUCcaCGCCGCg -3'
miRNA:   3'- gcUCG-CGGUU--UGGCGGGcaGUGGUGg -5'
1574 3' -58 NC_001347.2 + 13511 0.73 0.54694
Target:  5'- cCGGGUgcucacccGCCGGGCgGCCCGg-GCCGCCg -3'
miRNA:   3'- -GCUCG--------CGGUUUGgCGGGCagUGGUGG- -5'
1574 3' -58 NC_001347.2 + 14302 0.69 0.809936
Target:  5'- gGAGCuccCCGcGCUGCCUGUgGCgGCCg -3'
miRNA:   3'- gCUCGc--GGUuUGGCGGGCAgUGgUGG- -5'
1574 3' -58 NC_001347.2 + 15260 0.68 0.821476
Target:  5'- gCGAGCGUCAacgucagacgcguauGgaacaccgucACCuguGCCCG-CACCACCa -3'
miRNA:   3'- -GCUCGCGGU---------------U----------UGG---CGGGCaGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 15560 0.79 0.300976
Target:  5'- cCGAGCGCgAGGCCGCUgGUCAUCAg- -3'
miRNA:   3'- -GCUCGCGgUUUGGCGGgCAGUGGUgg -5'
1574 3' -58 NC_001347.2 + 16528 0.7 0.748361
Target:  5'- gGuAGCGCC-AGCCGCCCG-CuUgGCCg -3'
miRNA:   3'- gC-UCGCGGuUUGGCGGGCaGuGgUGG- -5'
1574 3' -58 NC_001347.2 + 17108 0.72 0.614327
Target:  5'- aCGGccGCGCCAuGCCGgUCGUCcgccgucgGCCGCCg -3'
miRNA:   3'- -GCU--CGCGGUuUGGCgGGCAG--------UGGUGG- -5'
1574 3' -58 NC_001347.2 + 18759 0.74 0.518734
Target:  5'- gCGAGUGUCGguuggaggAGCUGCCCGUCuguCACCa -3'
miRNA:   3'- -GCUCGCGGU--------UUGGCGGGCAGug-GUGG- -5'
1574 3' -58 NC_001347.2 + 19368 0.66 0.915328
Target:  5'- gCGAGCaaaaGCCAuGCaCGCCCGcggaCACaCGCUg -3'
miRNA:   3'- -GCUCG----CGGUuUG-GCGGGCa---GUG-GUGG- -5'
1574 3' -58 NC_001347.2 + 19618 0.69 0.79296
Target:  5'- -cGGCGau-AACCGCCggCGUUGCCGCCa -3'
miRNA:   3'- gcUCGCgguUUGGCGG--GCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 20430 0.77 0.386903
Target:  5'- gGuGCGCCGcagcggcuuuguGCCGagaCCGUCGCCACCa -3'
miRNA:   3'- gCuCGCGGUu-----------UGGCg--GGCAGUGGUGG- -5'
1574 3' -58 NC_001347.2 + 21354 0.67 0.878356
Target:  5'- --cGCGCCu--CCGuCCuCGUCGCCuuCCa -3'
miRNA:   3'- gcuCGCGGuuuGGC-GG-GCAGUGGu-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.