Results 1 - 20 of 209 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1574 | 3' | -58 | NC_001347.2 | + | 225847 | 0.83 | 0.156959 |
Target: 5'- -cAGCGCCAccACCGCugCCGUCGCCACCg -3' miRNA: 3'- gcUCGCGGUu-UGGCG--GGCAGUGGUGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 119723 | 0.66 | 0.925956 |
Target: 5'- -cAGCaCCGuuaCGCCCuGUCugCACCa -3' miRNA: 3'- gcUCGcGGUuugGCGGG-CAGugGUGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 88262 | 0.66 | 0.925956 |
Target: 5'- aGAGCGCgGcguaCGCUgGUCACguCGCCg -3' miRNA: 3'- gCUCGCGgUuug-GCGGgCAGUG--GUGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 81638 | 0.66 | 0.925956 |
Target: 5'- -cGGCGCC--GCCGCCgGccUCGgUACCg -3' miRNA: 3'- gcUCGCGGuuUGGCGGgC--AGUgGUGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 195243 | 0.66 | 0.925956 |
Target: 5'- uGAGCaGCCAuacAUCGCCCGcgUACgACg -3' miRNA: 3'- gCUCG-CGGUu--UGGCGGGCa-GUGgUGg -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 138808 | 0.66 | 0.925956 |
Target: 5'- --cGCaGCCAGACCGCagugGUgGCCACg -3' miRNA: 3'- gcuCG-CGGUUUGGCGgg--CAgUGGUGg -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 91133 | 0.66 | 0.925445 |
Target: 5'- aCGAGCGCCucaaGAGCgCGCUCGauaaacugacguuUCGCCcgugcuCCg -3' miRNA: 3'- -GCUCGCGG----UUUG-GCGGGC-------------AGUGGu-----GG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 79842 | 0.66 | 0.92075 |
Target: 5'- cCGAGCGCaAGACCguggacgguugGCCCGUgGgCCuggGCCu -3' miRNA: 3'- -GCUCGCGgUUUGG-----------CGGGCAgU-GG---UGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 22170 | 0.66 | 0.925445 |
Target: 5'- uGAGuCGCCGAcggucaccaucguGCCGCuCCaUCGCaGCCa -3' miRNA: 3'- gCUC-GCGGUU-------------UGGCG-GGcAGUGgUGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 225578 | 0.66 | 0.925956 |
Target: 5'- -cGGUGaCUuAGCCGCCCGUgGCCGg- -3' miRNA: 3'- gcUCGC-GGuUUGGCGGGCAgUGGUgg -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 24574 | 0.66 | 0.927978 |
Target: 5'- uGAGCGaCCGguucucgcucagcgaAACCGgcaCCCG-CGCUGCCg -3' miRNA: 3'- gCUCGC-GGU---------------UUGGC---GGGCaGUGGUGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 126005 | 0.66 | 0.930456 |
Target: 5'- -aAGUGCuCGGACucgcggcggguggCGCCCGUCuuCGCCg -3' miRNA: 3'- gcUCGCG-GUUUG-------------GCGGGCAGugGUGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 77875 | 0.66 | 0.930946 |
Target: 5'- cCGAGCGCCugggcGCCGUgCG-CGuaGCCa -3' miRNA: 3'- -GCUCGCGGuu---UGGCGgGCaGUggUGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 153286 | 0.66 | 0.930946 |
Target: 5'- aCGuAGCGCCGuucACCG-UCGaCGCCACUu -3' miRNA: 3'- -GC-UCGCGGUu--UGGCgGGCaGUGGUGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 141747 | 0.66 | 0.930946 |
Target: 5'- -aGGUGCUAGuCCGCgguucUCGUCGCCcGCCg -3' miRNA: 3'- gcUCGCGGUUuGGCG-----GGCAGUGG-UGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 94983 | 0.66 | 0.930946 |
Target: 5'- aCGAGCGCgCAGccGCUGCCCagaUCACaCAg- -3' miRNA: 3'- -GCUCGCG-GUU--UGGCGGGc--AGUG-GUgg -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 27054 | 0.66 | 0.930946 |
Target: 5'- uCGGGCGCaucacCCGCcucauggacCCGcCGCUACCg -3' miRNA: 3'- -GCUCGCGguuu-GGCG---------GGCaGUGGUGG- -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 11774 | 0.66 | 0.930946 |
Target: 5'- -aGGCuGCCAAguGCCGCUCcaCGCCGCg -3' miRNA: 3'- gcUCG-CGGUU--UGGCGGGcaGUGGUGg -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 195852 | 0.66 | 0.930946 |
Target: 5'- aGGcGUGCCcuuGCCGCCCGau-CCGCa -3' miRNA: 3'- gCU-CGCGGuu-UGGCGGGCaguGGUGg -5' |
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1574 | 3' | -58 | NC_001347.2 | + | 1504 | 0.66 | 0.930946 |
Target: 5'- uGGGCGCCGGguuCCGCgUGUUcguguACgACCu -3' miRNA: 3'- gCUCGCGGUUu--GGCGgGCAG-----UGgUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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