miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1574 5' -53.2 NC_001347.2 + 76443 0.66 0.994595
Target:  5'- uGGGCgAACCGACGcagaUGAUGcagggcacgCGGCGu -3'
miRNA:   3'- gCUCG-UUGGCUGCa---ACUGCaa-------GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 171715 0.66 0.994595
Target:  5'- gCGAGUugguGACCGAgGcgGugGUUUGGgGc -3'
miRNA:   3'- -GCUCG----UUGGCUgCaaCugCAAGCCgC- -5'
1574 5' -53.2 NC_001347.2 + 96807 0.66 0.994595
Target:  5'- aGAGCcaccagguGCCGGCGacUGACGccggcaUCGGCa -3'
miRNA:   3'- gCUCGu-------UGGCUGCa-ACUGCa-----AGCCGc -5'
1574 5' -53.2 NC_001347.2 + 166406 0.66 0.994518
Target:  5'- uGGGCcACCGuGCGgugacccUUGGCGUgUCGGCu -3'
miRNA:   3'- gCUCGuUGGC-UGC-------AACUGCA-AGCCGc -5'
1574 5' -53.2 NC_001347.2 + 185223 0.66 0.992876
Target:  5'- uCGAGCcuGCC-ACGUUGucACGcaucUCGGCGg -3'
miRNA:   3'- -GCUCGu-UGGcUGCAAC--UGCa---AGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 181322 0.66 0.992876
Target:  5'- -cAGCGGCCGGCGUgaGGCcaUCGuGCGu -3'
miRNA:   3'- gcUCGUUGGCUGCAa-CUGcaAGC-CGC- -5'
1574 5' -53.2 NC_001347.2 + 142554 0.66 0.992876
Target:  5'- -cGGCGAagaCGAgGcUGGCGgcgUCGGCGg -3'
miRNA:   3'- gcUCGUUg--GCUgCaACUGCa--AGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 140898 0.66 0.992876
Target:  5'- aGAGCAGCCgcGACGaggUGGCG---GGCGc -3'
miRNA:   3'- gCUCGUUGG--CUGCa--ACUGCaagCCGC- -5'
1574 5' -53.2 NC_001347.2 + 66764 0.66 0.992585
Target:  5'- cCGGGCccgaccCCGACGUccgcccgacgguggUGGCGg-CGGCGg -3'
miRNA:   3'- -GCUCGuu----GGCUGCA--------------ACUGCaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 111625 0.66 0.991867
Target:  5'- gCGcAGCGACaugGACGgcGACGUgcguaccgCGGCa -3'
miRNA:   3'- -GC-UCGUUGg--CUGCaaCUGCAa-------GCCGc -5'
1574 5' -53.2 NC_001347.2 + 155906 0.67 0.989511
Target:  5'- cCGGGUAaauaaAUCGGCGgUGGCG-UCGGUGc -3'
miRNA:   3'- -GCUCGU-----UGGCUGCaACUGCaAGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 208030 0.67 0.988148
Target:  5'- uGGGCGaugggACCGACGUcggagucgcGGCGUUCguuGGCGc -3'
miRNA:   3'- gCUCGU-----UGGCUGCAa--------CUGCAAG---CCGC- -5'
1574 5' -53.2 NC_001347.2 + 112626 0.67 0.98786
Target:  5'- aGAGUcgcGCCGACGguaauaggccggUGAUGguggCGGCGg -3'
miRNA:   3'- gCUCGu--UGGCUGCa-----------ACUGCaa--GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 174021 0.67 0.986652
Target:  5'- gGAGaaaacGCCGGCGgaGACGa-CGGCGg -3'
miRNA:   3'- gCUCgu---UGGCUGCaaCUGCaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 34305 0.67 0.986652
Target:  5'- aCGGuGUcGCCacCGUUGACGUgggCGGCGa -3'
miRNA:   3'- -GCU-CGuUGGcuGCAACUGCAa--GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 63071 0.67 0.986652
Target:  5'- gGAGgAcuGCCGGCGggUGugGgcUCGGCa -3'
miRNA:   3'- gCUCgU--UGGCUGCa-ACugCa-AGCCGc -5'
1574 5' -53.2 NC_001347.2 + 83815 0.67 0.985015
Target:  5'- --cGC-ACCGGCaucagcUGGCGUUCGGCa -3'
miRNA:   3'- gcuCGuUGGCUGca----ACUGCAAGCCGc -5'
1574 5' -53.2 NC_001347.2 + 191987 0.67 0.985015
Target:  5'- --cGCAG-CGGCGgcGACGgaCGGCGg -3'
miRNA:   3'- gcuCGUUgGCUGCaaCUGCaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 197547 0.67 0.985015
Target:  5'- cCGcAGCGugGCCGGCG-UGGCGgccgaCGGCa -3'
miRNA:   3'- -GC-UCGU--UGGCUGCaACUGCaa---GCCGc -5'
1574 5' -53.2 NC_001347.2 + 159459 0.67 0.98323
Target:  5'- --cGCGGCCGcuCGaUGACGaugUCGGCGc -3'
miRNA:   3'- gcuCGUUGGCu-GCaACUGCa--AGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.