Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1574 | 5' | -53.2 | NC_001347.2 | + | 66764 | 0.66 | 0.992585 |
Target: 5'- cCGGGCccgaccCCGACGUccgcccgacgguggUGGCGg-CGGCGg -3' miRNA: 3'- -GCUCGuu----GGCUGCA--------------ACUGCaaGCCGC- -5' |
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1574 | 5' | -53.2 | NC_001347.2 | + | 142554 | 0.66 | 0.992876 |
Target: 5'- -cGGCGAagaCGAgGcUGGCGgcgUCGGCGg -3' miRNA: 3'- gcUCGUUg--GCUgCaACUGCa--AGCCGC- -5' |
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1574 | 5' | -53.2 | NC_001347.2 | + | 140898 | 0.66 | 0.992876 |
Target: 5'- aGAGCAGCCgcGACGaggUGGCG---GGCGc -3' miRNA: 3'- gCUCGUUGG--CUGCa--ACUGCaagCCGC- -5' |
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1574 | 5' | -53.2 | NC_001347.2 | + | 111625 | 0.66 | 0.991867 |
Target: 5'- gCGcAGCGACaugGACGgcGACGUgcguaccgCGGCa -3' miRNA: 3'- -GC-UCGUUGg--CUGCaaCUGCAa-------GCCGc -5' |
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1574 | 5' | -53.2 | NC_001347.2 | + | 76443 | 0.66 | 0.994595 |
Target: 5'- uGGGCgAACCGACGcagaUGAUGcagggcacgCGGCGu -3' miRNA: 3'- gCUCG-UUGGCUGCa---ACUGCaa-------GCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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