miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1574 5' -53.2 NC_001347.2 + 2006 0.68 0.981288
Target:  5'- gCGAGCGGCacggaGACGgaGGCcgcCGGCGg -3'
miRNA:   3'- -GCUCGUUGg----CUGCaaCUGcaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 98344 0.68 0.981085
Target:  5'- uGGGCuuccacguGCCGAcacaccgucagcaCGUUGGCGUUcCGGCc -3'
miRNA:   3'- gCUCGu-------UGGCU-------------GCAACUGCAA-GCCGc -5'
1574 5' -53.2 NC_001347.2 + 115196 0.68 0.979183
Target:  5'- -cGGCcGCCGACGUc-GCG-UCGGCGu -3'
miRNA:   3'- gcUCGuUGGCUGCAacUGCaAGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 34258 0.68 0.976907
Target:  5'- uGGGCGACUGACGUgacucuUGACGUUUa--- -3'
miRNA:   3'- gCUCGUUGGCUGCA------ACUGCAAGccgc -5'
1574 5' -53.2 NC_001347.2 + 75408 0.68 0.974453
Target:  5'- gGAGCGgcgGCCGugGc-GGCGgcagCGGCGc -3'
miRNA:   3'- gCUCGU---UGGCugCaaCUGCaa--GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 67428 0.68 0.974453
Target:  5'- gGAGCGAaagaagugaCGACGgcGACGUcgacgaCGGCGa -3'
miRNA:   3'- gCUCGUUg--------GCUGCaaCUGCAa-----GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 203897 0.68 0.974453
Target:  5'- aCGAGCAGCCGccGCGU--GCGgauaGGCa -3'
miRNA:   3'- -GCUCGUUGGC--UGCAacUGCaag-CCGc -5'
1574 5' -53.2 NC_001347.2 + 94681 0.68 0.974453
Target:  5'- aCGGGC-ACCGAaauacgGUUGACGUUauGCa -3'
miRNA:   3'- -GCUCGuUGGCUg-----CAACUGCAAgcCGc -5'
1574 5' -53.2 NC_001347.2 + 2364 0.68 0.968986
Target:  5'- uGGGCGcGCUGGCGcuggGACGcgagUCGGCGc -3'
miRNA:   3'- gCUCGU-UGGCUGCaa--CUGCa---AGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 156429 0.68 0.968692
Target:  5'- gCGAGCuguacgccaagaaAGCCG-CGUcGACGUcgUUGGCGg -3'
miRNA:   3'- -GCUCG-------------UUGGCuGCAaCUGCA--AGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 157617 0.69 0.96596
Target:  5'- cCGAGCGGCUGcacGCGUUGuuGgaCGGUGu -3'
miRNA:   3'- -GCUCGUUGGC---UGCAACugCaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 148626 0.69 0.96596
Target:  5'- gCGGGUGGCCGGCGUcaGCGUUCGcaGCc -3'
miRNA:   3'- -GCUCGUUGGCUGCAacUGCAAGC--CGc -5'
1574 5' -53.2 NC_001347.2 + 209741 0.69 0.958227
Target:  5'- gGAGCAccguggguGCCGGCGguaUGACGgccaguucuugcgcUUCGGCc -3'
miRNA:   3'- gCUCGU--------UGGCUGCa--ACUGC--------------AAGCCGc -5'
1574 5' -53.2 NC_001347.2 + 142992 0.69 0.955652
Target:  5'- gGAGgAGCCGGCGgcGGCGgu-GGUGg -3'
miRNA:   3'- gCUCgUUGGCUGCaaCUGCaagCCGC- -5'
1574 5' -53.2 NC_001347.2 + 192189 0.7 0.934124
Target:  5'- uGAGCGGCCGcgGCGcgGGC--UCGGCGu -3'
miRNA:   3'- gCUCGUUGGC--UGCaaCUGcaAGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 7955 0.71 0.912833
Target:  5'- gGuGCGACUGACGgUGGCGg-CGGCa -3'
miRNA:   3'- gCuCGUUGGCUGCaACUGCaaGCCGc -5'
1574 5' -53.2 NC_001347.2 + 1961 0.71 0.912833
Target:  5'- gGGGCcGgCGACGggGACGg-CGGCGg -3'
miRNA:   3'- gCUCGuUgGCUGCaaCUGCaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 78351 0.71 0.900828
Target:  5'- cCGGGCGGacCCGGCGUgGugGgaccCGGCGg -3'
miRNA:   3'- -GCUCGUU--GGCUGCAaCugCaa--GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 117881 0.73 0.852028
Target:  5'- gGGGCGACC-ACGUcaGACGgggCGGCGg -3'
miRNA:   3'- gCUCGUUGGcUGCAa-CUGCaa-GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 229658 0.73 0.836296
Target:  5'- gCGGGCGuguggcggguguGCCGGCGgggUGugGUggcggggugugUCGGCGg -3'
miRNA:   3'- -GCUCGU------------UGGCUGCa--ACugCA-----------AGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.