miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1574 5' -53.2 NC_001347.2 + 179 0.73 0.836296
Target:  5'- gCGGGCGuguggcggguguGCCGGCGgggUGugGUggcggggugugUCGGCGg -3'
miRNA:   3'- -GCUCGU------------UGGCUGCa--ACugCA-----------AGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 1427 0.74 0.793995
Target:  5'- --cGCAGCCGACcc-GACGUUgGGCGa -3'
miRNA:   3'- gcuCGUUGGCUGcaaCUGCAAgCCGC- -5'
1574 5' -53.2 NC_001347.2 + 1961 0.71 0.912833
Target:  5'- gGGGCcGgCGACGggGACGg-CGGCGg -3'
miRNA:   3'- gCUCGuUgGCUGCaaCUGCaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 2006 0.68 0.981288
Target:  5'- gCGAGCGGCacggaGACGgaGGCcgcCGGCGg -3'
miRNA:   3'- -GCUCGUUGg----CUGCaaCUGcaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 2364 0.68 0.968986
Target:  5'- uGGGCGcGCUGGCGcuggGACGcgagUCGGCGc -3'
miRNA:   3'- gCUCGU-UGGCUGCaa--CUGCa---AGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 7955 0.71 0.912833
Target:  5'- gGuGCGACUGACGgUGGCGg-CGGCa -3'
miRNA:   3'- gCuCGUUGGCUGCaACUGCaaGCCGc -5'
1574 5' -53.2 NC_001347.2 + 34258 0.68 0.976907
Target:  5'- uGGGCGACUGACGUgacucuUGACGUUUa--- -3'
miRNA:   3'- gCUCGUUGGCUGCA------ACUGCAAGccgc -5'
1574 5' -53.2 NC_001347.2 + 34305 0.67 0.986652
Target:  5'- aCGGuGUcGCCacCGUUGACGUgggCGGCGa -3'
miRNA:   3'- -GCU-CGuUGGcuGCAACUGCAa--GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 63071 0.67 0.986652
Target:  5'- gGAGgAcuGCCGGCGggUGugGgcUCGGCa -3'
miRNA:   3'- gCUCgU--UGGCUGCa-ACugCa-AGCCGc -5'
1574 5' -53.2 NC_001347.2 + 66764 0.66 0.992585
Target:  5'- cCGGGCccgaccCCGACGUccgcccgacgguggUGGCGg-CGGCGg -3'
miRNA:   3'- -GCUCGuu----GGCUGCA--------------ACUGCaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 67428 0.68 0.974453
Target:  5'- gGAGCGAaagaagugaCGACGgcGACGUcgacgaCGGCGa -3'
miRNA:   3'- gCUCGUUg--------GCUGCaaCUGCAa-----GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 75408 0.68 0.974453
Target:  5'- gGAGCGgcgGCCGugGc-GGCGgcagCGGCGc -3'
miRNA:   3'- gCUCGU---UGGCugCaaCUGCaa--GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 76443 0.66 0.994595
Target:  5'- uGGGCgAACCGACGcagaUGAUGcagggcacgCGGCGu -3'
miRNA:   3'- gCUCG-UUGGCUGCa---ACUGCaa-------GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 78351 0.71 0.900828
Target:  5'- cCGGGCGGacCCGGCGUgGugGgaccCGGCGg -3'
miRNA:   3'- -GCUCGUU--GGCUGCAaCugCaa--GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 83815 0.67 0.985015
Target:  5'- --cGC-ACCGGCaucagcUGGCGUUCGGCa -3'
miRNA:   3'- gcuCGuUGGCUGca----ACUGCAAGCCGc -5'
1574 5' -53.2 NC_001347.2 + 94681 0.68 0.974453
Target:  5'- aCGGGC-ACCGAaauacgGUUGACGUUauGCa -3'
miRNA:   3'- -GCUCGuUGGCUg-----CAACUGCAAgcCGc -5'
1574 5' -53.2 NC_001347.2 + 96807 0.66 0.994595
Target:  5'- aGAGCcaccagguGCCGGCGacUGACGccggcaUCGGCa -3'
miRNA:   3'- gCUCGu-------UGGCUGCa-ACUGCa-----AGCCGc -5'
1574 5' -53.2 NC_001347.2 + 98344 0.68 0.981085
Target:  5'- uGGGCuuccacguGCCGAcacaccgucagcaCGUUGGCGUUcCGGCc -3'
miRNA:   3'- gCUCGu-------UGGCU-------------GCAACUGCAA-GCCGc -5'
1574 5' -53.2 NC_001347.2 + 111625 0.66 0.991867
Target:  5'- gCGcAGCGACaugGACGgcGACGUgcguaccgCGGCa -3'
miRNA:   3'- -GC-UCGUUGg--CUGCaaCUGCAa-------GCCGc -5'
1574 5' -53.2 NC_001347.2 + 112626 0.67 0.98786
Target:  5'- aGAGUcgcGCCGACGguaauaggccggUGAUGguggCGGCGg -3'
miRNA:   3'- gCUCGu--UGGCUGCa-----------ACUGCaa--GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.