miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1574 5' -53.2 NC_001347.2 + 115196 0.68 0.979183
Target:  5'- -cGGCcGCCGACGUc-GCG-UCGGCGu -3'
miRNA:   3'- gcUCGuUGGCUGCAacUGCaAGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 117881 0.73 0.852028
Target:  5'- gGGGCGACC-ACGUcaGACGgggCGGCGg -3'
miRNA:   3'- gCUCGUUGGcUGCAa-CUGCaa-GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 140898 0.66 0.992876
Target:  5'- aGAGCAGCCgcGACGaggUGGCG---GGCGc -3'
miRNA:   3'- gCUCGUUGG--CUGCa--ACUGCaagCCGC- -5'
1574 5' -53.2 NC_001347.2 + 142554 0.66 0.992876
Target:  5'- -cGGCGAagaCGAgGcUGGCGgcgUCGGCGg -3'
miRNA:   3'- gcUCGUUg--GCUgCaACUGCa--AGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 142992 0.69 0.955652
Target:  5'- gGAGgAGCCGGCGgcGGCGgu-GGUGg -3'
miRNA:   3'- gCUCgUUGGCUGCaaCUGCaagCCGC- -5'
1574 5' -53.2 NC_001347.2 + 148626 0.69 0.96596
Target:  5'- gCGGGUGGCCGGCGUcaGCGUUCGcaGCc -3'
miRNA:   3'- -GCUCGUUGGCUGCAacUGCAAGC--CGc -5'
1574 5' -53.2 NC_001347.2 + 155906 0.67 0.989511
Target:  5'- cCGGGUAaauaaAUCGGCGgUGGCG-UCGGUGc -3'
miRNA:   3'- -GCUCGU-----UGGCUGCaACUGCaAGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 156429 0.68 0.968692
Target:  5'- gCGAGCuguacgccaagaaAGCCG-CGUcGACGUcgUUGGCGg -3'
miRNA:   3'- -GCUCG-------------UUGGCuGCAaCUGCA--AGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 157617 0.69 0.96596
Target:  5'- cCGAGCGGCUGcacGCGUUGuuGgaCGGUGu -3'
miRNA:   3'- -GCUCGUUGGC---UGCAACugCaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 159459 0.67 0.98323
Target:  5'- --cGCGGCCGcuCGaUGACGaugUCGGCGc -3'
miRNA:   3'- gcuCGUUGGCu-GCaACUGCa--AGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 166406 0.66 0.994518
Target:  5'- uGGGCcACCGuGCGgugacccUUGGCGUgUCGGCu -3'
miRNA:   3'- gCUCGuUGGC-UGC-------AACUGCA-AGCCGc -5'
1574 5' -53.2 NC_001347.2 + 171715 0.66 0.994595
Target:  5'- gCGAGUugguGACCGAgGcgGugGUUUGGgGc -3'
miRNA:   3'- -GCUCG----UUGGCUgCaaCugCAAGCCgC- -5'
1574 5' -53.2 NC_001347.2 + 172695 0.76 0.690185
Target:  5'- gGAGCcGCCGACGcUGGCGcugCGGCu -3'
miRNA:   3'- gCUCGuUGGCUGCaACUGCaa-GCCGc -5'
1574 5' -53.2 NC_001347.2 + 174021 0.67 0.986652
Target:  5'- gGAGaaaacGCCGGCGgaGACGa-CGGCGg -3'
miRNA:   3'- gCUCgu---UGGCUGCaaCUGCaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 181322 0.66 0.992876
Target:  5'- -cAGCGGCCGGCGUgaGGCcaUCGuGCGu -3'
miRNA:   3'- gcUCGUUGGCUGCAa-CUGcaAGC-CGC- -5'
1574 5' -53.2 NC_001347.2 + 185223 0.66 0.992876
Target:  5'- uCGAGCcuGCC-ACGUUGucACGcaucUCGGCGg -3'
miRNA:   3'- -GCUCGu-UGGcUGCAAC--UGCa---AGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 188818 1.08 0.010897
Target:  5'- uCGAGCAACCGACGUUGACGUUCGGCGc -3'
miRNA:   3'- -GCUCGUUGGCUGCAACUGCAAGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 191987 0.67 0.985015
Target:  5'- --cGCAG-CGGCGgcGACGgaCGGCGg -3'
miRNA:   3'- gcuCGUUgGCUGCaaCUGCaaGCCGC- -5'
1574 5' -53.2 NC_001347.2 + 192036 0.73 0.82816
Target:  5'- aCGAGCGGCagCGGCGacGACGguggCGGCGa -3'
miRNA:   3'- -GCUCGUUG--GCUGCaaCUGCaa--GCCGC- -5'
1574 5' -53.2 NC_001347.2 + 192189 0.7 0.934124
Target:  5'- uGAGCGGCCGcgGCGcgGGC--UCGGCGu -3'
miRNA:   3'- gCUCGUUGGC--UGCaaCUGcaAGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.