miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15740 3' -54.3 NC_004065.1 + 129170 0.66 0.987816
Target:  5'- cGCAGCCugGACGccgaACUGaUCUCc--- -3'
miRNA:   3'- -CGUCGGugCUGCug--UGGC-AGAGcuuc -5'
15740 3' -54.3 NC_004065.1 + 159973 0.66 0.987816
Target:  5'- --cGCgGCGAuCGugGCCGUCUCc--- -3'
miRNA:   3'- cguCGgUGCU-GCugUGGCAGAGcuuc -5'
15740 3' -54.3 NC_004065.1 + 171891 0.66 0.987816
Target:  5'- cGCAcGaCAgGGCGGCAgCCuUCUCGGAGg -3'
miRNA:   3'- -CGU-CgGUgCUGCUGU-GGcAGAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 120573 0.66 0.987816
Target:  5'- aGCGGgCGgGAccucCGGCGCCGgUCUCGGc- -3'
miRNA:   3'- -CGUCgGUgCU----GCUGUGGC-AGAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 48813 0.66 0.987816
Target:  5'- cGCAGCCGgcCGaACGGCACCauccUCUCa--- -3'
miRNA:   3'- -CGUCGGU--GC-UGCUGUGGc---AGAGcuuc -5'
15740 3' -54.3 NC_004065.1 + 137922 0.66 0.987816
Target:  5'- --uGCCGucUGACG-CGCCGggCUCGGAGc -3'
miRNA:   3'- cguCGGU--GCUGCuGUGGCa-GAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 43101 0.66 0.987816
Target:  5'- gGCAuCCGCGAccCGGCGCCGaUCcgcgcucgCGAAGa -3'
miRNA:   3'- -CGUcGGUGCU--GCUGUGGC-AGa-------GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 34445 0.66 0.987816
Target:  5'- cCAGCCgucacccgaGCGugGGCACgcagGUCUCGGc- -3'
miRNA:   3'- cGUCGG---------UGCugCUGUGg---CAGAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 201388 0.66 0.98767
Target:  5'- gGguGCCACGuCGACGCacagaugCGUCgCGgcGg -3'
miRNA:   3'- -CguCGGUGCuGCUGUG-------GCAGaGCuuC- -5'
15740 3' -54.3 NC_004065.1 + 130877 0.66 0.98767
Target:  5'- gGCGGCCACGGuguuuaccgccguCGGCcgcaccugcguuGCCGUCaaaCGggGu -3'
miRNA:   3'- -CGUCGGUGCU-------------GCUG------------UGGCAGa--GCuuC- -5'
15740 3' -54.3 NC_004065.1 + 163258 0.66 0.987374
Target:  5'- cGCAGCgGCGGCGccgGCGCCuccucgcgauuccgGUacggaUCGAAGa -3'
miRNA:   3'- -CGUCGgUGCUGC---UGUGG--------------CAg----AGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 84351 0.66 0.986294
Target:  5'- gGCGGUCGuCGAaucCGGgAUCGUgUCGAGGg -3'
miRNA:   3'- -CGUCGGU-GCU---GCUgUGGCAgAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 191600 0.66 0.986294
Target:  5'- cGCcGuCCACGACG-UACUGcUCUCGAc- -3'
miRNA:   3'- -CGuC-GGUGCUGCuGUGGC-AGAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 71940 0.66 0.986294
Target:  5'- gGUGGCCugGucggagGCGACGCCGcCggUGGAGc -3'
miRNA:   3'- -CGUCGGugC------UGCUGUGGCaGa-GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 71191 0.66 0.986294
Target:  5'- aGCAGCCugcACG-CGAUuuUCGUUUCGAAa -3'
miRNA:   3'- -CGUCGG---UGCuGCUGu-GGCAGAGCUUc -5'
15740 3' -54.3 NC_004065.1 + 163651 0.66 0.986294
Target:  5'- cGCAGCCGCucGACGAUcagcgGCCGguguugCUCaGGAa -3'
miRNA:   3'- -CGUCGGUG--CUGCUG-----UGGCa-----GAG-CUUc -5'
15740 3' -54.3 NC_004065.1 + 170325 0.66 0.986294
Target:  5'- cGCGGCCGCu-CGGCGCCcuUCUaCGAc- -3'
miRNA:   3'- -CGUCGGUGcuGCUGUGGc-AGA-GCUuc -5'
15740 3' -54.3 NC_004065.1 + 41404 0.66 0.986294
Target:  5'- uGCucGCCGcCGGCGACACgGUCgccgUGAc- -3'
miRNA:   3'- -CGu-CGGU-GCUGCUGUGgCAGa---GCUuc -5'
15740 3' -54.3 NC_004065.1 + 28100 0.66 0.986294
Target:  5'- gGguGCCGCuGuCGAUACCGU--UGAAGa -3'
miRNA:   3'- -CguCGGUG-CuGCUGUGGCAgaGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 120204 0.66 0.986294
Target:  5'- cGCAGCaggACGGCGACGagggCGuUCUCGucGa -3'
miRNA:   3'- -CGUCGg--UGCUGCUGUg---GC-AGAGCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.