miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15740 3' -54.3 NC_004065.1 + 71940 0.66 0.986294
Target:  5'- gGUGGCCugGucggagGCGACGCCGcCggUGGAGc -3'
miRNA:   3'- -CGUCGGugC------UGCUGUGGCaGa-GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 76786 0.66 0.980848
Target:  5'- cGCcGCCGCGACGGCgaacgcuaucACCGUUcaUCGccGu -3'
miRNA:   3'- -CGuCGGUGCUGCUG----------UGGCAG--AGCuuC- -5'
15740 3' -54.3 NC_004065.1 + 159973 0.66 0.987816
Target:  5'- --cGCgGCGAuCGugGCCGUCUCc--- -3'
miRNA:   3'- cguCGgUGCU-GCugUGGCAGAGcuuc -5'
15740 3' -54.3 NC_004065.1 + 141431 0.66 0.982628
Target:  5'- -aAGCCcuCGGCGAaccgcuuCugCGUCUCGGAc -3'
miRNA:   3'- cgUCGGu-GCUGCU-------GugGCAGAGCUUc -5'
15740 3' -54.3 NC_004065.1 + 76679 0.66 0.982818
Target:  5'- --cGCguCGGCGcCGCCGUCccCGAAGa -3'
miRNA:   3'- cguCGguGCUGCuGUGGCAGa-GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 1573 0.66 0.982818
Target:  5'- gGCGuGCCuGCGAgCGACcuCCGUCUCGccGu -3'
miRNA:   3'- -CGU-CGG-UGCU-GCUGu-GGCAGAGCuuC- -5'
15740 3' -54.3 NC_004065.1 + 109525 0.66 0.980642
Target:  5'- aGCAGgucaccgucuaccCCGgGcACGACACCGUCgucagcgaccUCGAGGu -3'
miRNA:   3'- -CGUC-------------GGUgC-UGCUGUGGCAG----------AGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 154165 0.66 0.982818
Target:  5'- gGCGGCgGCGGCGGCuguugcuggcucGCCGUCg----- -3'
miRNA:   3'- -CGUCGgUGCUGCUG------------UGGCAGagcuuc -5'
15740 3' -54.3 NC_004065.1 + 91487 0.66 0.98463
Target:  5'- aGguG-CACGACGuCGCCGUgaucCUCGAc- -3'
miRNA:   3'- -CguCgGUGCUGCuGUGGCA----GAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 196835 0.66 0.98463
Target:  5'- uGCGGCaggugcggGCGACGguACAgCGUCUCGcAGu -3'
miRNA:   3'- -CGUCGg-------UGCUGC--UGUgGCAGAGCuUC- -5'
15740 3' -54.3 NC_004065.1 + 143003 0.66 0.980848
Target:  5'- gGCAGUCgugcaaACGACGucGCACCGgcgucgUUUCGGAGu -3'
miRNA:   3'- -CGUCGG------UGCUGC--UGUGGC------AGAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 135399 0.66 0.982818
Target:  5'- cCGGCCGCGccCGACcCCGUCagGAGc -3'
miRNA:   3'- cGUCGGUGCu-GCUGuGGCAGagCUUc -5'
15740 3' -54.3 NC_004065.1 + 137708 0.66 0.982628
Target:  5'- gGCAGUucucguCACGACGGUugCGauccaguUCUCGAAGu -3'
miRNA:   3'- -CGUCG------GUGCUGCUGugGC-------AGAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 45545 0.66 0.98463
Target:  5'- cGCGGCgGCGGCGGCAgCCGcccaGAAa -3'
miRNA:   3'- -CGUCGgUGCUGCUGU-GGCagagCUUc -5'
15740 3' -54.3 NC_004065.1 + 133902 0.66 0.98463
Target:  5'- -gGGCCACccucGCGGagcgACCGcCUCGAAGg -3'
miRNA:   3'- cgUCGGUGc---UGCUg---UGGCaGAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 128952 0.66 0.98463
Target:  5'- gGCGGgCGCGAguucucggagaUGACuGCCGUCUCGc-- -3'
miRNA:   3'- -CGUCgGUGCU-----------GCUG-UGGCAGAGCuuc -5'
15740 3' -54.3 NC_004065.1 + 208344 0.66 0.986134
Target:  5'- cGCGGUCGCGuaucUGACcgcgACCGUCUauucuuaCGAGGg -3'
miRNA:   3'- -CGUCGGUGCu---GCUG----UGGCAGA-------GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 164593 0.66 0.980848
Target:  5'- -gAGCCACcACGGcCGCCG-CUCGcAGg -3'
miRNA:   3'- cgUCGGUGcUGCU-GUGGCaGAGCuUC- -5'
15740 3' -54.3 NC_004065.1 + 201388 0.66 0.98767
Target:  5'- gGguGCCACGuCGACGCacagaugCGUCgCGgcGg -3'
miRNA:   3'- -CguCGGUGCuGCUGUG-------GCAGaGCuuC- -5'
15740 3' -54.3 NC_004065.1 + 128571 0.66 0.986294
Target:  5'- cGCAGCgGCaGCGACGUCGgcggCGAAGg -3'
miRNA:   3'- -CGUCGgUGcUGCUGUGGCaga-GCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.