miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15740 3' -54.3 NC_004065.1 + 161709 1.11 0.005792
Target:  5'- cGCAGCCACGACGACACCGUCUCGAAGu -3'
miRNA:   3'- -CGUCGGUGCUGCUGUGGCAGAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 157554 0.86 0.210944
Target:  5'- uCAGCCGCGcCGACACCGUCUCGc-- -3'
miRNA:   3'- cGUCGGUGCuGCUGUGGCAGAGCuuc -5'
15740 3' -54.3 NC_004065.1 + 133174 0.81 0.372562
Target:  5'- gGCGcCCGCGGCGACagcgcGCCGUCUCGAAa -3'
miRNA:   3'- -CGUcGGUGCUGCUG-----UGGCAGAGCUUc -5'
15740 3' -54.3 NC_004065.1 + 51520 0.81 0.388622
Target:  5'- -aGGCCAUGACGACGCCGUCgcgucCGAu- -3'
miRNA:   3'- cgUCGGUGCUGCUGUGGCAGa----GCUuc -5'
15740 3' -54.3 NC_004065.1 + 27394 0.8 0.422072
Target:  5'- aGCAGCaGCGGCGGCAUCGUCgUCGAc- -3'
miRNA:   3'- -CGUCGgUGCUGCUGUGGCAG-AGCUuc -5'
15740 3' -54.3 NC_004065.1 + 120149 0.8 0.422072
Target:  5'- cGCGGCCGCGGCGACGCCGg--UGGc- -3'
miRNA:   3'- -CGUCGGUGCUGCUGUGGCagaGCUuc -5'
15740 3' -54.3 NC_004065.1 + 194905 0.8 0.430701
Target:  5'- -gAGaCCACGGCGcCGCCGUCUCGAu- -3'
miRNA:   3'- cgUC-GGUGCUGCuGUGGCAGAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 154020 0.79 0.448265
Target:  5'- gGCGGCgGCGGCGACGuuGUCaUCGAGa -3'
miRNA:   3'- -CGUCGgUGCUGCUGUggCAG-AGCUUc -5'
15740 3' -54.3 NC_004065.1 + 70119 0.77 0.580502
Target:  5'- aGCGGCgGCGGCGGCGCCGa-UCGAc- -3'
miRNA:   3'- -CGUCGgUGCUGCUGUGGCagAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 32320 0.76 0.600292
Target:  5'- gGCGGCCGCGACGGCGucggaCGUCgagUCGAGc -3'
miRNA:   3'- -CGUCGGUGCUGCUGUg----GCAG---AGCUUc -5'
15740 3' -54.3 NC_004065.1 + 6741 0.76 0.610224
Target:  5'- gGUAGCCGCGGCGGCACuCGggUCGGu- -3'
miRNA:   3'- -CGUCGGUGCUGCUGUG-GCagAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 59716 0.76 0.610224
Target:  5'- aGCGGCCGCGGCGcacgGCgACCGUCgCGGAc -3'
miRNA:   3'- -CGUCGGUGCUGC----UG-UGGCAGaGCUUc -5'
15740 3' -54.3 NC_004065.1 + 168564 0.76 0.620171
Target:  5'- gGCGGCgGCGGCGACAgcgggCGUCUCGGc- -3'
miRNA:   3'- -CGUCGgUGCUGCUGUg----GCAGAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 61340 0.76 0.630127
Target:  5'- -gAGCCGCGGCGAC-CCGgg-CGAAGa -3'
miRNA:   3'- cgUCGGUGCUGCUGuGGCagaGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 185362 0.76 0.630127
Target:  5'- cGCuucGUCGcCGACGACGCCGUCgucuUCGAAGc -3'
miRNA:   3'- -CGu--CGGU-GCUGCUGUGGCAG----AGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 128416 0.76 0.640084
Target:  5'- gGCAGCgGCGGCGGCGCCGcCacCGAGu -3'
miRNA:   3'- -CGUCGgUGCUGCUGUGGCaGa-GCUUc -5'
15740 3' -54.3 NC_004065.1 + 169055 0.76 0.640084
Target:  5'- uGCGGCCguACGcGCGAUucaagACCGUCUUGAGGa -3'
miRNA:   3'- -CGUCGG--UGC-UGCUG-----UGGCAGAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 110189 0.75 0.650035
Target:  5'- gGCGGCCGCGACG-CGCCGcCgcccgUCGAGa -3'
miRNA:   3'- -CGUCGGUGCUGCuGUGGCaG-----AGCUUc -5'
15740 3' -54.3 NC_004065.1 + 20711 0.75 0.659973
Target:  5'- aGUAGCaCACGACGGCACCGaCggCGAc- -3'
miRNA:   3'- -CGUCG-GUGCUGCUGUGGCaGa-GCUuc -5'
15740 3' -54.3 NC_004065.1 + 138197 0.75 0.66989
Target:  5'- aCGGCCACgGGCGACcgaCGUCUCGAc- -3'
miRNA:   3'- cGUCGGUG-CUGCUGug-GCAGAGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.