miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15740 3' -54.3 NC_004065.1 + 170325 0.66 0.986294
Target:  5'- cGCGGCCGCu-CGGCGCCcuUCUaCGAc- -3'
miRNA:   3'- -CGUCGGUGcuGCUGUGGc-AGA-GCUuc -5'
15740 3' -54.3 NC_004065.1 + 128571 0.66 0.986294
Target:  5'- cGCAGCgGCaGCGACGUCGgcggCGAAGg -3'
miRNA:   3'- -CGUCGgUGcUGCUGUGGCaga-GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 191600 0.66 0.986294
Target:  5'- cGCcGuCCACGACG-UACUGcUCUCGAc- -3'
miRNA:   3'- -CGuC-GGUGCUGCuGUGGC-AGAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 208344 0.66 0.986134
Target:  5'- cGCGGUCGCGuaucUGACcgcgACCGUCUauucuuaCGAGGg -3'
miRNA:   3'- -CGUCGGUGCu---GCUG----UGGCAGA-------GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 133902 0.66 0.98463
Target:  5'- -gGGCCACccucGCGGagcgACCGcCUCGAAGg -3'
miRNA:   3'- cgUCGGUGc---UGCUg---UGGCaGAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 128952 0.66 0.98463
Target:  5'- gGCGGgCGCGAguucucggagaUGACuGCCGUCUCGc-- -3'
miRNA:   3'- -CGUCgGUGCU-----------GCUG-UGGCAGAGCuuc -5'
15740 3' -54.3 NC_004065.1 + 196835 0.66 0.98463
Target:  5'- uGCGGCaggugcggGCGACGguACAgCGUCUCGcAGu -3'
miRNA:   3'- -CGUCGg-------UGCUGC--UGUgGCAGAGCuUC- -5'
15740 3' -54.3 NC_004065.1 + 45545 0.66 0.98463
Target:  5'- cGCGGCgGCGGCGGCAgCCGcccaGAAa -3'
miRNA:   3'- -CGUCGgUGCUGCUGU-GGCagagCUUc -5'
15740 3' -54.3 NC_004065.1 + 91487 0.66 0.98463
Target:  5'- aGguG-CACGACGuCGCCGUgaucCUCGAc- -3'
miRNA:   3'- -CguCgGUGCUGCuGUGGCA----GAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 120116 0.66 0.98463
Target:  5'- gGCGGCCGCGGCGGacgaGCCGggacccCcCGAn- -3'
miRNA:   3'- -CGUCGGUGCUGCUg---UGGCa-----GaGCUuc -5'
15740 3' -54.3 NC_004065.1 + 167409 0.66 0.98463
Target:  5'- uGCuGCCGCGGCuGCuGCCGcCggCGggGg -3'
miRNA:   3'- -CGuCGGUGCUGcUG-UGGCaGa-GCuuC- -5'
15740 3' -54.3 NC_004065.1 + 129912 0.66 0.98463
Target:  5'- cGgGGCCugG-CGGCACCuGUUUCccGAGGu -3'
miRNA:   3'- -CgUCGGugCuGCUGUGG-CAGAG--CUUC- -5'
15740 3' -54.3 NC_004065.1 + 118270 0.66 0.98463
Target:  5'- gGCGGCCucgacguacuUGACGAC-CaCGUCgcaggCGAAGg -3'
miRNA:   3'- -CGUCGGu---------GCUGCUGuG-GCAGa----GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 28322 0.66 0.98463
Target:  5'- aCGGCCucaucCGAUACgCGUCUCGAAa -3'
miRNA:   3'- cGUCGGugcu-GCUGUG-GCAGAGCUUc -5'
15740 3' -54.3 NC_004065.1 + 144539 0.66 0.98463
Target:  5'- -aAGCCACGcCGACuCagGcCUCGAAGa -3'
miRNA:   3'- cgUCGGUGCuGCUGuGg-CaGAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 80801 0.66 0.98463
Target:  5'- gGCGGCgGCGGCGGCAgCGggagCagCGAc- -3'
miRNA:   3'- -CGUCGgUGCUGCUGUgGCa---Ga-GCUuc -5'
15740 3' -54.3 NC_004065.1 + 66867 0.66 0.984456
Target:  5'- gGCcGCCgauccggACGACGAgcCGCUGUC-CGGAGa -3'
miRNA:   3'- -CGuCGG-------UGCUGCU--GUGGCAGaGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 189772 0.66 0.982818
Target:  5'- gGCGGCa--GugGACGCUGUUUgGAAu -3'
miRNA:   3'- -CGUCGgugCugCUGUGGCAGAgCUUc -5'
15740 3' -54.3 NC_004065.1 + 147924 0.66 0.982818
Target:  5'- cGCAGCUggagaucgacuGCGACGuCGCCGaCauccuaccgaUCGAAGa -3'
miRNA:   3'- -CGUCGG-----------UGCUGCuGUGGCaG----------AGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 123415 0.66 0.982818
Target:  5'- -gGGCCcugauggaguCGGCG-CACCGUC-CGGAGa -3'
miRNA:   3'- cgUCGGu---------GCUGCuGUGGCAGaGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.