miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15740 3' -54.3 NC_004065.1 + 1573 0.66 0.982818
Target:  5'- gGCGuGCCuGCGAgCGACcuCCGUCUCGccGu -3'
miRNA:   3'- -CGU-CGG-UGCU-GCUGu-GGCAGAGCuuC- -5'
15740 3' -54.3 NC_004065.1 + 3038 0.68 0.958631
Target:  5'- aCGGUCgaACGACGACGguuucCCGUCUCGu-- -3'
miRNA:   3'- cGUCGG--UGCUGCUGU-----GGCAGAGCuuc -5'
15740 3' -54.3 NC_004065.1 + 4286 0.73 0.784261
Target:  5'- gGUAGCCACGACGGCGugUCGuUCUCa--- -3'
miRNA:   3'- -CGUCGGUGCUGCUGU--GGC-AGAGcuuc -5'
15740 3' -54.3 NC_004065.1 + 4415 0.67 0.976409
Target:  5'- gGUGGCCACGGCGggccugACGCUGaccCUCGGGc -3'
miRNA:   3'- -CGUCGGUGCUGC------UGUGGCa--GAGCUUc -5'
15740 3' -54.3 NC_004065.1 + 6741 0.76 0.610224
Target:  5'- gGUAGCCGCGGCGGCACuCGggUCGGu- -3'
miRNA:   3'- -CGUCGGUGCUGCUGUG-GCagAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 6933 0.69 0.942637
Target:  5'- aCGGCCuCGGCGucCGCCGUCg-GAAGc -3'
miRNA:   3'- cGUCGGuGCUGCu-GUGGCAGagCUUC- -5'
15740 3' -54.3 NC_004065.1 + 9445 0.66 0.986294
Target:  5'- aGCGGCaCGUGGCGAaACaCGUCUCGuuGg -3'
miRNA:   3'- -CGUCG-GUGCUGCUgUG-GCAGAGCuuC- -5'
15740 3' -54.3 NC_004065.1 + 10194 0.68 0.95107
Target:  5'- -aGGCCAcCGAUacCACCGUUUCGAAc -3'
miRNA:   3'- cgUCGGU-GCUGcuGUGGCAGAGCUUc -5'
15740 3' -54.3 NC_004065.1 + 16963 0.71 0.873259
Target:  5'- --uGCCAUGAauagcaCGACgGCCGUUUCGAGGa -3'
miRNA:   3'- cguCGGUGCU------GCUG-UGGCAGAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 18947 0.68 0.946964
Target:  5'- aGCAGCUAUaugGACGGCGCauaUUCGAGGa -3'
miRNA:   3'- -CGUCGGUG---CUGCUGUGgcaGAGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 19935 0.68 0.954958
Target:  5'- gGUGGUUACGACgGACACCGUCg----- -3'
miRNA:   3'- -CGUCGGUGCUG-CUGUGGCAGagcuuc -5'
15740 3' -54.3 NC_004065.1 + 20166 0.72 0.818965
Target:  5'- uCAGCCAUG-CGGCGgaCGUCUCGGAc -3'
miRNA:   3'- cGUCGGUGCuGCUGUg-GCAGAGCUUc -5'
15740 3' -54.3 NC_004065.1 + 20711 0.75 0.659973
Target:  5'- aGUAGCaCACGACGGCACCGaCggCGAc- -3'
miRNA:   3'- -CGUCG-GUGCUGCUGUGGCaGa-GCUuc -5'
15740 3' -54.3 NC_004065.1 + 21684 0.68 0.958273
Target:  5'- aCGGCagguaGCGACGcaguCGCCGUCcggacaaUCGAAGg -3'
miRNA:   3'- cGUCGg----UGCUGCu---GUGGCAG-------AGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 22483 0.67 0.978714
Target:  5'- uCAGgCGCGACGACGCgGagcgCgcggCGAGGa -3'
miRNA:   3'- cGUCgGUGCUGCUGUGgCa---Ga---GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 22910 0.69 0.933312
Target:  5'- cGCGGUCAgUGGCGGCGgucggcgguuCCGUCUCGucGu -3'
miRNA:   3'- -CGUCGGU-GCUGCUGU----------GGCAGAGCuuC- -5'
15740 3' -54.3 NC_004065.1 + 23467 0.67 0.968105
Target:  5'- cGCGGCUcgcgacgAUGACGACGCCGagUC-CGAu- -3'
miRNA:   3'- -CGUCGG-------UGCUGCUGUGGC--AGaGCUuc -5'
15740 3' -54.3 NC_004065.1 + 24129 0.68 0.962093
Target:  5'- gGCGGCCcauccgucaaggGCGACGACGUCGUaucccaCGAAGa -3'
miRNA:   3'- -CGUCGG------------UGCUGCUGUGGCAga----GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 24537 0.69 0.933312
Target:  5'- gGCAGCgACGACGGCAgCGgagaCGAGc -3'
miRNA:   3'- -CGUCGgUGCUGCUGUgGCaga-GCUUc -5'
15740 3' -54.3 NC_004065.1 + 26417 0.67 0.978714
Target:  5'- --cGCCACGGCGGCGgCGgcCUCcGAGa -3'
miRNA:   3'- cguCGGUGCUGCUGUgGCa-GAGcUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.