miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15740 3' -54.3 NC_004065.1 + 54121 0.73 0.755916
Target:  5'- --cGCCGCGACGAuCAUCGUCucccaucaaagguUCGGAGg -3'
miRNA:   3'- cguCGGUGCUGCU-GUGGCAG-------------AGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 139593 0.75 0.690611
Target:  5'- gGUGGCCGCGGCGAuCGCCGUUggcaaggcgcagaugCGGAGc -3'
miRNA:   3'- -CGUCGGUGCUGCU-GUGGCAGa--------------GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 56645 0.74 0.709186
Target:  5'- aGCGGCCGCGGCacccuuCACCGUCgguUCGAc- -3'
miRNA:   3'- -CGUCGGUGCUGcu----GUGGCAG---AGCUuc -5'
15740 3' -54.3 NC_004065.1 + 170587 0.74 0.718875
Target:  5'- cGCGGaUCACGACGACuuUGUCgUCGGAGa -3'
miRNA:   3'- -CGUC-GGUGCUGCUGugGCAG-AGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 223225 0.74 0.718875
Target:  5'- gGCGGUaGCGGCGACGCgGUCUUcugGAAGa -3'
miRNA:   3'- -CGUCGgUGCUGCUGUGgCAGAG---CUUC- -5'
15740 3' -54.3 NC_004065.1 + 108008 0.74 0.728495
Target:  5'- -uGGCCGCGugaGACACCGUCUgguuaGAGGa -3'
miRNA:   3'- cgUCGGUGCug-CUGUGGCAGAg----CUUC- -5'
15740 3' -54.3 NC_004065.1 + 163642 0.74 0.728495
Target:  5'- gGCGGCgGCGGCGGCAgCGgcagCGGAGg -3'
miRNA:   3'- -CGUCGgUGCUGCUGUgGCaga-GCUUC- -5'
15740 3' -54.3 NC_004065.1 + 200790 0.74 0.728495
Target:  5'- gGCGGUgGCgGGCGACGgCGUCUCGGc- -3'
miRNA:   3'- -CGUCGgUG-CUGCUGUgGCAGAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 149711 0.74 0.738036
Target:  5'- -gGGCCGCGGCcGCGCCGgccCUCGGAc -3'
miRNA:   3'- cgUCGGUGCUGcUGUGGCa--GAGCUUc -5'
15740 3' -54.3 NC_004065.1 + 138197 0.75 0.66989
Target:  5'- aCGGCCACgGGCGACcgaCGUCUCGAc- -3'
miRNA:   3'- cGUCGGUG-CUGCUGug-GCAGAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 20711 0.75 0.659973
Target:  5'- aGUAGCaCACGACGGCACCGaCggCGAc- -3'
miRNA:   3'- -CGUCG-GUGCUGCUGUGGCaGa-GCUuc -5'
15740 3' -54.3 NC_004065.1 + 110189 0.75 0.650035
Target:  5'- gGCGGCCGCGACG-CGCCGcCgcccgUCGAGa -3'
miRNA:   3'- -CGUCGGUGCUGCuGUGGCaG-----AGCUUc -5'
15740 3' -54.3 NC_004065.1 + 27394 0.8 0.422072
Target:  5'- aGCAGCaGCGGCGGCAUCGUCgUCGAc- -3'
miRNA:   3'- -CGUCGgUGCUGCUGUGGCAG-AGCUuc -5'
15740 3' -54.3 NC_004065.1 + 194905 0.8 0.430701
Target:  5'- -gAGaCCACGGCGcCGCCGUCUCGAu- -3'
miRNA:   3'- cgUC-GGUGCUGCuGUGGCAGAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 154020 0.79 0.448265
Target:  5'- gGCGGCgGCGGCGACGuuGUCaUCGAGa -3'
miRNA:   3'- -CGUCGgUGCUGCUGUggCAG-AGCUUc -5'
15740 3' -54.3 NC_004065.1 + 70119 0.77 0.580502
Target:  5'- aGCGGCgGCGGCGGCGCCGa-UCGAc- -3'
miRNA:   3'- -CGUCGgUGCUGCUGUGGCagAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 59716 0.76 0.610224
Target:  5'- aGCGGCCGCGGCGcacgGCgACCGUCgCGGAc -3'
miRNA:   3'- -CGUCGGUGCUGC----UG-UGGCAGaGCUUc -5'
15740 3' -54.3 NC_004065.1 + 168564 0.76 0.620171
Target:  5'- gGCGGCgGCGGCGACAgcgggCGUCUCGGc- -3'
miRNA:   3'- -CGUCGgUGCUGCUGUg----GCAGAGCUuc -5'
15740 3' -54.3 NC_004065.1 + 61340 0.76 0.630127
Target:  5'- -gAGCCGCGGCGAC-CCGgg-CGAAGa -3'
miRNA:   3'- cgUCGGUGCUGCUGuGGCagaGCUUC- -5'
15740 3' -54.3 NC_004065.1 + 128416 0.76 0.640084
Target:  5'- gGCAGCgGCGGCGGCGCCGcCacCGAGu -3'
miRNA:   3'- -CGUCGgUGCUGCUGUGGCaGa-GCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.