miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15740 5' -54 NC_004065.1 + 115849 0.66 0.987114
Target:  5'- cCUCCUCGuacgagucgggGACGGCGuuguagacCCAGuuucGGUCUUCGu -3'
miRNA:   3'- -GAGGAGC-----------UUGUCGC--------GGUC----CUAGAAGC- -5'
15740 5' -54 NC_004065.1 + 213591 0.66 0.987114
Target:  5'- gCUCgCUagUGGGCucgGGCGUCguAGGAUCUUCGg -3'
miRNA:   3'- -GAG-GA--GCUUG---UCGCGG--UCCUAGAAGC- -5'
15740 5' -54 NC_004065.1 + 73112 0.66 0.987114
Target:  5'- uUCCUCGu-CGGUGCCggcggAGGAUCg--- -3'
miRNA:   3'- gAGGAGCuuGUCGCGG-----UCCUAGaagc -5'
15740 5' -54 NC_004065.1 + 119797 0.66 0.986489
Target:  5'- gCUCCUCGGGCucgaagaagacccGCuggaggaaacucGCCagcAGGAUCUUCGu -3'
miRNA:   3'- -GAGGAGCUUGu------------CG------------CGG---UCCUAGAAGC- -5'
15740 5' -54 NC_004065.1 + 17211 0.66 0.986168
Target:  5'- -cCCUUGAGCAGCGCCaaagcguccgaaAGGGccucagcugccucgaUCUcgUCGa -3'
miRNA:   3'- gaGGAGCUUGUCGCGG------------UCCU---------------AGA--AGC- -5'
15740 5' -54 NC_004065.1 + 83414 0.66 0.985507
Target:  5'- aUCCU--GACGGCGuCCAGGGUg-UCGa -3'
miRNA:   3'- gAGGAgcUUGUCGC-GGUCCUAgaAGC- -5'
15740 5' -54 NC_004065.1 + 137862 0.66 0.985507
Target:  5'- -gCgUCGAucgccgccgACAGCGUCGGGGugaUCUUCa -3'
miRNA:   3'- gaGgAGCU---------UGUCGCGGUCCU---AGAAGc -5'
15740 5' -54 NC_004065.1 + 52057 0.66 0.985507
Target:  5'- uCUCCUCGGcgaaGCGGCGuucgcgagaaccCCAGGAgaagCggCGg -3'
miRNA:   3'- -GAGGAGCU----UGUCGC------------GGUCCUa---GaaGC- -5'
15740 5' -54 NC_004065.1 + 56794 0.66 0.983752
Target:  5'- gCUUaUCGAugAGCGCCGuGaGAUCgUCGg -3'
miRNA:   3'- -GAGgAGCUugUCGCGGU-C-CUAGaAGC- -5'
15740 5' -54 NC_004065.1 + 132451 0.66 0.983752
Target:  5'- -aUgUCGAAgGGCGCCgAGGucagCUUCGu -3'
miRNA:   3'- gaGgAGCUUgUCGCGG-UCCua--GAAGC- -5'
15740 5' -54 NC_004065.1 + 211461 0.66 0.983752
Target:  5'- gCUCCUCgGAGgAGuCGCCGGagaGGUCgUCGg -3'
miRNA:   3'- -GAGGAG-CUUgUC-GCGGUC---CUAGaAGC- -5'
15740 5' -54 NC_004065.1 + 139910 0.66 0.983752
Target:  5'- cCUCCggCcGGCGGCGCCAGcGGguugaaCUUCGu -3'
miRNA:   3'- -GAGGa-GcUUGUCGCGGUC-CUa-----GAAGC- -5'
15740 5' -54 NC_004065.1 + 200946 0.66 0.982624
Target:  5'- -gCCUCGGagcgcagggagcgcgGCGGCuCCAGGAUCggugCGu -3'
miRNA:   3'- gaGGAGCU---------------UGUCGcGGUCCUAGaa--GC- -5'
15740 5' -54 NC_004065.1 + 170095 0.66 0.98184
Target:  5'- gCUCCgggaacgCGAugGGCucggugaaccuGCCGGGAUCggguaUCGa -3'
miRNA:   3'- -GAGGa------GCUugUCG-----------CGGUCCUAGa----AGC- -5'
15740 5' -54 NC_004065.1 + 122455 0.66 0.98184
Target:  5'- -aUCUCGGGCAGgGUCAGGGUgg-CGu -3'
miRNA:   3'- gaGGAGCUUGUCgCGGUCCUAgaaGC- -5'
15740 5' -54 NC_004065.1 + 202745 0.66 0.981839
Target:  5'- gUCgUCG-GCGGCGCCGccGGucUCUUCGu -3'
miRNA:   3'- gAGgAGCuUGUCGCGGU--CCu-AGAAGC- -5'
15740 5' -54 NC_004065.1 + 138139 0.66 0.981839
Target:  5'- uUCgUCGAGgAGaaccCGCCGGGggCUUCa -3'
miRNA:   3'- gAGgAGCUUgUC----GCGGUCCuaGAAGc -5'
15740 5' -54 NC_004065.1 + 103209 0.66 0.981639
Target:  5'- -cCCUCGAGuggccacCGGgGCCGGGAUCc--- -3'
miRNA:   3'- gaGGAGCUU-------GUCgCGGUCCUAGaagc -5'
15740 5' -54 NC_004065.1 + 91507 0.67 0.977515
Target:  5'- aUCCUCG-ACGaCGUCgAGGAUCUcgUCGg -3'
miRNA:   3'- gAGGAGCuUGUcGCGG-UCCUAGA--AGC- -5'
15740 5' -54 NC_004065.1 + 142705 0.67 0.977515
Target:  5'- gCUCCUgGAcCGGCGUCGGGGgucCUgggCGc -3'
miRNA:   3'- -GAGGAgCUuGUCGCGGUCCUa--GAa--GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.