miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15740 5' -54 NC_004065.1 + 161749 1.1 0.006417
Target:  5'- cCUCCUCGAACAGCGCCAGGAUCUUCGa -3'
miRNA:   3'- -GAGGAGCUUGUCGCGGUCCUAGAAGC- -5'
15740 5' -54 NC_004065.1 + 152522 0.79 0.44552
Target:  5'- gCUCCUCGGGCuccgccGGCGCCGGcuUCUUCGg -3'
miRNA:   3'- -GAGGAGCUUG------UCGCGGUCcuAGAAGC- -5'
15740 5' -54 NC_004065.1 + 197263 0.75 0.639285
Target:  5'- uUCCUCGAGCAGCGCUacgagcgcauGGGcggCUUCu -3'
miRNA:   3'- gAGGAGCUUGUCGCGG----------UCCua-GAAGc -5'
15740 5' -54 NC_004065.1 + 102546 0.74 0.728716
Target:  5'- gUCCUCGucgguGGCGCCGGGGUCgggUCc -3'
miRNA:   3'- gAGGAGCuug--UCGCGGUCCUAGa--AGc -5'
15740 5' -54 NC_004065.1 + 109515 0.72 0.794062
Target:  5'- aUCgUCGAGCGGCGCCaagagGGGGUCg--- -3'
miRNA:   3'- gAGgAGCUUGUCGCGG-----UCCUAGaagc -5'
15740 5' -54 NC_004065.1 + 18447 0.72 0.820117
Target:  5'- -aCCUCGGACAGcCGCC-GGAUUccUCGa -3'
miRNA:   3'- gaGGAGCUUGUC-GCGGuCCUAGa-AGC- -5'
15740 5' -54 NC_004065.1 + 50580 0.72 0.83178
Target:  5'- aUCCUCGAGCacccuacugucuucgGGCGCCGGccUCUUCc -3'
miRNA:   3'- gAGGAGCUUG---------------UCGCGGUCcuAGAAGc -5'
15740 5' -54 NC_004065.1 + 122224 0.71 0.852509
Target:  5'- gUCCUCGAGCGG-GCCGgcGGGUCgUUCc -3'
miRNA:   3'- gAGGAGCUUGUCgCGGU--CCUAG-AAGc -5'
15740 5' -54 NC_004065.1 + 171312 0.71 0.852509
Target:  5'- -aCCUCGGACcucAGCGCCAaGGUCUgcaugUCGg -3'
miRNA:   3'- gaGGAGCUUG---UCGCGGUcCUAGA-----AGC- -5'
15740 5' -54 NC_004065.1 + 167715 0.71 0.867572
Target:  5'- -gCCUCG-ACuGCGCCcugugacgaGGGAUCUUCu -3'
miRNA:   3'- gaGGAGCuUGuCGCGG---------UCCUAGAAGc -5'
15740 5' -54 NC_004065.1 + 163481 0.7 0.894552
Target:  5'- gCUCCgUCG-GCGGCGCCGGuGGcggcggcuucaauUCUUCGg -3'
miRNA:   3'- -GAGG-AGCuUGUCGCGGUC-CU-------------AGAAGC- -5'
15740 5' -54 NC_004065.1 + 102648 0.7 0.901561
Target:  5'- gUCCUCGAACGGCGa---GAUCUcUCGg -3'
miRNA:   3'- gAGGAGCUUGUCGCggucCUAGA-AGC- -5'
15740 5' -54 NC_004065.1 + 100389 0.69 0.91928
Target:  5'- gUCCUUGGGCAGCaGCCGgcGGGUCcagUUCu -3'
miRNA:   3'- gAGGAGCUUGUCG-CGGU--CCUAG---AAGc -5'
15740 5' -54 NC_004065.1 + 76732 0.69 0.91928
Target:  5'- aCUCCUCGGcggggacgggcGCGGCGCCGGcGG-CcUCGu -3'
miRNA:   3'- -GAGGAGCU-----------UGUCGCGGUC-CUaGaAGC- -5'
15740 5' -54 NC_004065.1 + 130520 0.69 0.924727
Target:  5'- cCUCCUCGuGC-GCGCCAGGGa----- -3'
miRNA:   3'- -GAGGAGCuUGuCGCGGUCCUagaagc -5'
15740 5' -54 NC_004065.1 + 121661 0.69 0.924727
Target:  5'- gUCCUCGAACA-CGgCAGuGAUUUUCu -3'
miRNA:   3'- gAGGAGCUUGUcGCgGUC-CUAGAAGc -5'
15740 5' -54 NC_004065.1 + 161483 0.69 0.929942
Target:  5'- -gCUUCGAGaucGCGuCCAGGAUCUUgCGg -3'
miRNA:   3'- gaGGAGCUUgu-CGC-GGUCCUAGAA-GC- -5'
15740 5' -54 NC_004065.1 + 61812 0.69 0.934438
Target:  5'- --gCUCGGACGGCGCUucaucggauucggAGGcgccAUCUUCGg -3'
miRNA:   3'- gagGAGCUUGUCGCGG-------------UCC----UAGAAGC- -5'
15740 5' -54 NC_004065.1 + 201312 0.69 0.939678
Target:  5'- cCUCCUCGGACAGgaucuccgcccUGCCGGGAc----- -3'
miRNA:   3'- -GAGGAGCUUGUC-----------GCGGUCCUagaagc -5'
15740 5' -54 NC_004065.1 + 223161 0.69 0.939678
Target:  5'- -gCCUUGAAgAGuCGUCGGGAUCgaCGg -3'
miRNA:   3'- gaGGAGCUUgUC-GCGGUCCUAGaaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.