miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15740 5' -54 NC_004065.1 + 91507 0.67 0.977515
Target:  5'- aUCCUCG-ACGaCGUCgAGGAUCUcgUCGg -3'
miRNA:   3'- gAGGAGCuUGUcGCGG-UCCUAGA--AGC- -5'
15740 5' -54 NC_004065.1 + 176098 0.67 0.975088
Target:  5'- uUCCUCGGAaGGCGUCA---UCUUCGu -3'
miRNA:   3'- gAGGAGCUUgUCGCGGUccuAGAAGC- -5'
15740 5' -54 NC_004065.1 + 60703 0.67 0.975088
Target:  5'- -gUUUCGAACGGCGCgCGGGA-CUUa- -3'
miRNA:   3'- gaGGAGCUUGUCGCG-GUCCUaGAAgc -5'
15740 5' -54 NC_004065.1 + 163618 0.67 0.975088
Target:  5'- -aCCUCGggUAGCuCC-GGAUCgagCGg -3'
miRNA:   3'- gaGGAGCuuGUCGcGGuCCUAGaa-GC- -5'
15740 5' -54 NC_004065.1 + 153620 0.67 0.975088
Target:  5'- --gCUCGGGCGGCGCCAcucGGA-CggCGg -3'
miRNA:   3'- gagGAGCUUGUCGCGGU---CCUaGaaGC- -5'
15740 5' -54 NC_004065.1 + 197086 0.67 0.972476
Target:  5'- uUCCUCGuAGCGGCucGCgGGGGUCa--- -3'
miRNA:   3'- gAGGAGC-UUGUCG--CGgUCCUAGaagc -5'
15740 5' -54 NC_004065.1 + 131036 0.67 0.972476
Target:  5'- gUgCUCuGGCGGCGCCGGGAUaCUa-- -3'
miRNA:   3'- gAgGAGcUUGUCGCGGUCCUA-GAagc -5'
15740 5' -54 NC_004065.1 + 4961 0.67 0.971655
Target:  5'- uCUCCUgGAGCGGcCGCCAucacgacgugccucGGG-CUUCa -3'
miRNA:   3'- -GAGGAgCUUGUC-GCGGU--------------CCUaGAAGc -5'
15740 5' -54 NC_004065.1 + 86310 0.67 0.969672
Target:  5'- uCUCgCUCGc-CGGCGCCGaccuGGUCUUCGu -3'
miRNA:   3'- -GAG-GAGCuuGUCGCGGUc---CUAGAAGC- -5'
15740 5' -54 NC_004065.1 + 164357 0.67 0.966669
Target:  5'- gUCCUCG---GGCGUC-GGAUCUUCc -3'
miRNA:   3'- gAGGAGCuugUCGCGGuCCUAGAAGc -5'
15740 5' -54 NC_004065.1 + 135810 0.67 0.966669
Target:  5'- uCUCCUcCGAucuucauCGGCGUCGGcGAUCUggCGa -3'
miRNA:   3'- -GAGGA-GCUu------GUCGCGGUC-CUAGAa-GC- -5'
15740 5' -54 NC_004065.1 + 194954 0.67 0.963462
Target:  5'- gUCUcCGAACGGgGUCugguGGAUCUUCu -3'
miRNA:   3'- gAGGaGCUUGUCgCGGu---CCUAGAAGc -5'
15740 5' -54 NC_004065.1 + 157231 0.68 0.956416
Target:  5'- aUCCUCuuGCAGCGagaaCCAGGAgcgUUCGa -3'
miRNA:   3'- gAGGAGcuUGUCGC----GGUCCUag-AAGC- -5'
15740 5' -54 NC_004065.1 + 221903 0.68 0.948497
Target:  5'- -aCCUCG-ACGGCGCCcGGcUCUggggCGa -3'
miRNA:   3'- gaGGAGCuUGUCGCGGuCCuAGAa---GC- -5'
15740 5' -54 NC_004065.1 + 169030 0.68 0.948497
Target:  5'- aUCCUCGGACAGCaguGCaAGGcgCUgCGg -3'
miRNA:   3'- gAGGAGCUUGUCG---CGgUCCuaGAaGC- -5'
15740 5' -54 NC_004065.1 + 143110 0.68 0.948497
Target:  5'- aUCUUC--GCGGCGCCGGGAaaggUCgUCGa -3'
miRNA:   3'- gAGGAGcuUGUCGCGGUCCU----AGaAGC- -5'
15740 5' -54 NC_004065.1 + 223161 0.69 0.939678
Target:  5'- -gCCUUGAAgAGuCGUCGGGAUCgaCGg -3'
miRNA:   3'- gaGGAGCUUgUC-GCGGUCCUAGaaGC- -5'
15740 5' -54 NC_004065.1 + 201312 0.69 0.939678
Target:  5'- cCUCCUCGGACAGgaucuccgcccUGCCGGGAc----- -3'
miRNA:   3'- -GAGGAGCUUGUC-----------GCGGUCCUagaagc -5'
15740 5' -54 NC_004065.1 + 61812 0.69 0.934438
Target:  5'- --gCUCGGACGGCGCUucaucggauucggAGGcgccAUCUUCGg -3'
miRNA:   3'- gagGAGCUUGUCGCGG-------------UCC----UAGAAGC- -5'
15740 5' -54 NC_004065.1 + 161483 0.69 0.929942
Target:  5'- -gCUUCGAGaucGCGuCCAGGAUCUUgCGg -3'
miRNA:   3'- gaGGAGCUUgu-CGC-GGUCCUAGAA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.