miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15740 5' -54 NC_004065.1 + 132451 0.66 0.983752
Target:  5'- -aUgUCGAAgGGCGCCgAGGucagCUUCGu -3'
miRNA:   3'- gaGgAGCUUgUCGCGG-UCCua--GAAGC- -5'
15740 5' -54 NC_004065.1 + 197086 0.67 0.972476
Target:  5'- uUCCUCGuAGCGGCucGCgGGGGUCa--- -3'
miRNA:   3'- gAGGAGC-UUGUCG--CGgUCCUAGaagc -5'
15740 5' -54 NC_004065.1 + 163618 0.67 0.975088
Target:  5'- -aCCUCGggUAGCuCC-GGAUCgagCGg -3'
miRNA:   3'- gaGGAGCuuGUCGcGGuCCUAGaa-GC- -5'
15740 5' -54 NC_004065.1 + 142705 0.67 0.977515
Target:  5'- gCUCCUgGAcCGGCGUCGGGGgucCUgggCGc -3'
miRNA:   3'- -GAGGAgCUuGUCGCGGUCCUa--GAa--GC- -5'
15740 5' -54 NC_004065.1 + 91507 0.67 0.977515
Target:  5'- aUCCUCG-ACGaCGUCgAGGAUCUcgUCGg -3'
miRNA:   3'- gAGGAGCuUGUcGCGG-UCCUAGA--AGC- -5'
15740 5' -54 NC_004065.1 + 170095 0.66 0.98184
Target:  5'- gCUCCgggaacgCGAugGGCucggugaaccuGCCGGGAUCggguaUCGa -3'
miRNA:   3'- -GAGGa------GCUugUCG-----------CGGUCCUAGa----AGC- -5'
15740 5' -54 NC_004065.1 + 122455 0.66 0.98184
Target:  5'- -aUCUCGGGCAGgGUCAGGGUgg-CGu -3'
miRNA:   3'- gaGGAGCUUGUCgCGGUCCUAgaaGC- -5'
15740 5' -54 NC_004065.1 + 200946 0.66 0.982624
Target:  5'- -gCCUCGGagcgcagggagcgcgGCGGCuCCAGGAUCggugCGu -3'
miRNA:   3'- gaGGAGCU---------------UGUCGcGGUCCUAGaa--GC- -5'
15740 5' -54 NC_004065.1 + 56794 0.66 0.983752
Target:  5'- gCUUaUCGAugAGCGCCGuGaGAUCgUCGg -3'
miRNA:   3'- -GAGgAGCUugUCGCGGU-C-CUAGaAGC- -5'
15740 5' -54 NC_004065.1 + 131036 0.67 0.972476
Target:  5'- gUgCUCuGGCGGCGCCGGGAUaCUa-- -3'
miRNA:   3'- gAgGAGcUUGUCGCGGUCCUA-GAagc -5'
15740 5' -54 NC_004065.1 + 135810 0.67 0.966669
Target:  5'- uCUCCUcCGAucuucauCGGCGUCGGcGAUCUggCGa -3'
miRNA:   3'- -GAGGA-GCUu------GUCGCGGUC-CUAGAa-GC- -5'
15740 5' -54 NC_004065.1 + 221903 0.68 0.948497
Target:  5'- -aCCUCG-ACGGCGCCcGGcUCUggggCGa -3'
miRNA:   3'- gaGGAGCuUGUCGCGGuCCuAGAa---GC- -5'
15740 5' -54 NC_004065.1 + 50580 0.72 0.83178
Target:  5'- aUCCUCGAGCacccuacugucuucgGGCGCCGGccUCUUCc -3'
miRNA:   3'- gAGGAGCUUG---------------UCGCGGUCcuAGAAGc -5'
15740 5' -54 NC_004065.1 + 122224 0.71 0.852509
Target:  5'- gUCCUCGAGCGG-GCCGgcGGGUCgUUCc -3'
miRNA:   3'- gAGGAGCUUGUCgCGGU--CCUAG-AAGc -5'
15740 5' -54 NC_004065.1 + 163481 0.7 0.894552
Target:  5'- gCUCCgUCG-GCGGCGCCGGuGGcggcggcuucaauUCUUCGg -3'
miRNA:   3'- -GAGG-AGCuUGUCGCGGUC-CU-------------AGAAGC- -5'
15740 5' -54 NC_004065.1 + 76732 0.69 0.91928
Target:  5'- aCUCCUCGGcggggacgggcGCGGCGCCGGcGG-CcUCGu -3'
miRNA:   3'- -GAGGAGCU-----------UGUCGCGGUC-CUaGaAGC- -5'
15740 5' -54 NC_004065.1 + 100389 0.69 0.91928
Target:  5'- gUCCUUGGGCAGCaGCCGgcGGGUCcagUUCu -3'
miRNA:   3'- gAGGAGCUUGUCG-CGGU--CCUAG---AAGc -5'
15740 5' -54 NC_004065.1 + 130520 0.69 0.924727
Target:  5'- cCUCCUCGuGC-GCGCCAGGGa----- -3'
miRNA:   3'- -GAGGAGCuUGuCGCGGUCCUagaagc -5'
15740 5' -54 NC_004065.1 + 223161 0.69 0.939678
Target:  5'- -gCCUUGAAgAGuCGUCGGGAUCgaCGg -3'
miRNA:   3'- gaGGAGCUUgUC-GCGGUCCUAGaaGC- -5'
15740 5' -54 NC_004065.1 + 201312 0.69 0.939678
Target:  5'- cCUCCUCGGACAGgaucuccgcccUGCCGGGAc----- -3'
miRNA:   3'- -GAGGAGCUUGUC-----------GCGGUCCUagaagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.