miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 46167 0.66 0.929671
Target:  5'- --gUUCGGcCACGGCCaaacacgcgacggcgUGggGGCCGa -3'
miRNA:   3'- aagAGGCU-GUGCCGGa--------------ACuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 79164 0.66 0.929164
Target:  5'- cUUCUCCauGAUcaACGGCacgGAGGGCgCGUg -3'
miRNA:   3'- -AAGAGG--CUG--UGCCGgaaCUUCCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 24114 0.66 0.929164
Target:  5'- ---gCCGACGuCGGCCUcGgcGGCC-Ca -3'
miRNA:   3'- aagaGGCUGU-GCCGGAaCuuCCGGcG- -5'
15741 3' -57.2 NC_004065.1 + 127787 0.66 0.929164
Target:  5'- -gCUCCGAC-CGGUa-UGucauGGCCGUg -3'
miRNA:   3'- aaGAGGCUGuGCCGgaACuu--CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 26892 0.66 0.929164
Target:  5'- ---gCCGGC-CGGUCca-GAGGCCGCu -3'
miRNA:   3'- aagaGGCUGuGCCGGaacUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 60960 0.66 0.929164
Target:  5'- -cCUCa-AgACGGUCUUGAAucgcgcguacGGCCGCa -3'
miRNA:   3'- aaGAGgcUgUGCCGGAACUU----------CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 152359 0.66 0.929164
Target:  5'- aUCUCCGACugcCGcGUCUUGAGcGCCu- -3'
miRNA:   3'- aAGAGGCUGu--GC-CGGAACUUcCGGcg -5'
15741 3' -57.2 NC_004065.1 + 21966 0.66 0.923979
Target:  5'- ---gCCGuCGuCGGCaggacggUGAGGGCCGCc -3'
miRNA:   3'- aagaGGCuGU-GCCGga-----ACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 113746 0.66 0.918567
Target:  5'- -aCUCCGGCGaggaGGCCgagGGAcagcgcGGCgGCa -3'
miRNA:   3'- aaGAGGCUGUg---CCGGaa-CUU------CCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 111046 0.66 0.918567
Target:  5'- --gUCUGGCACcGCCguaacGGAGGCgCGCg -3'
miRNA:   3'- aagAGGCUGUGcCGGaa---CUUCCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 22557 0.66 0.918567
Target:  5'- -aCUCCGACGCGGCacaGAcagaucAGcGCaCGCu -3'
miRNA:   3'- aaGAGGCUGUGCCGgaaCU------UC-CG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 120584 0.66 0.918567
Target:  5'- -cCUCCGGCGcCGGUCUc---GGCCGg -3'
miRNA:   3'- aaGAGGCUGU-GCCGGAacuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 142759 0.66 0.918567
Target:  5'- cUCUCCcgcgacGACgACGGCCUgcUGguGGUgGCg -3'
miRNA:   3'- aAGAGG------CUG-UGCCGGA--ACuuCCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 35939 0.66 0.912931
Target:  5'- -gCUCUGuCGCGGCCgc--AGGUCGUc -3'
miRNA:   3'- aaGAGGCuGUGCCGGaacuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 60733 0.66 0.912931
Target:  5'- cUUCUCguaGACguuACGGaaggaCUUGAggucgAGGCCGCa -3'
miRNA:   3'- -AAGAGg--CUG---UGCCg----GAACU-----UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 99967 0.66 0.912931
Target:  5'- ---aCCGcCGCGGCgUgcucGGGCCGCg -3'
miRNA:   3'- aagaGGCuGUGCCGgAacu-UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 169489 0.66 0.912931
Target:  5'- gUCUCCG--GCGGCUUcGucGGCUGUa -3'
miRNA:   3'- aAGAGGCugUGCCGGAaCuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 126735 0.66 0.909441
Target:  5'- -cCUgCCGcCGCGGCCUcGAagaaccugaaguucgAGGCCGg -3'
miRNA:   3'- aaGA-GGCuGUGCCGGAaCU---------------UCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 165868 0.66 0.90707
Target:  5'- gUCUCU--CACGGUCccGAaggcgAGGCCGCa -3'
miRNA:   3'- aAGAGGcuGUGCCGGaaCU-----UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 115842 0.66 0.90707
Target:  5'- aUCUCCu-CGCGGCC--GgcGGCgCGCu -3'
miRNA:   3'- aAGAGGcuGUGCCGGaaCuuCCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.