Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15741 | 3' | -57.2 | NC_004065.1 | + | 120584 | 0.66 | 0.918567 |
Target: 5'- -cCUCCGGCGcCGGUCUc---GGCCGg -3' miRNA: 3'- aaGAGGCUGU-GCCGGAacuuCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 99967 | 0.66 | 0.912931 |
Target: 5'- ---aCCGcCGCGGCgUgcucGGGCCGCg -3' miRNA: 3'- aagaGGCuGUGCCGgAacu-UCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 111046 | 0.66 | 0.918567 |
Target: 5'- --gUCUGGCACcGCCguaacGGAGGCgCGCg -3' miRNA: 3'- aagAGGCUGUGcCGGaa---CUUCCG-GCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 113746 | 0.66 | 0.918567 |
Target: 5'- -aCUCCGGCGaggaGGCCgagGGAcagcgcGGCgGCa -3' miRNA: 3'- aaGAGGCUGUg---CCGGaa-CUU------CCGgCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 81881 | 0.66 | 0.900987 |
Target: 5'- gUUCUCgGGCACGGCgggcgUGcuGAGGUCGg -3' miRNA: 3'- -AAGAGgCUGUGCCGga---AC--UUCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 75570 | 0.66 | 0.900987 |
Target: 5'- cUCggcggCCGugACGuucgugucGCCggcggggGGAGGCCGCu -3' miRNA: 3'- aAGa----GGCugUGC--------CGGaa-----CUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 165868 | 0.66 | 0.90707 |
Target: 5'- gUCUCU--CACGGUCccGAaggcgAGGCCGCa -3' miRNA: 3'- aAGAGGcuGUGCCGGaaCU-----UCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 35939 | 0.66 | 0.912931 |
Target: 5'- -gCUCUGuCGCGGCCgc--AGGUCGUc -3' miRNA: 3'- aaGAGGCuGUGCCGGaacuUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 26892 | 0.66 | 0.929164 |
Target: 5'- ---gCCGGC-CGGUCca-GAGGCCGCu -3' miRNA: 3'- aagaGGCUGuGCCGGaacUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 60733 | 0.66 | 0.912931 |
Target: 5'- cUUCUCguaGACguuACGGaaggaCUUGAggucgAGGCCGCa -3' miRNA: 3'- -AAGAGg--CUG---UGCCg----GAACU-----UCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 57954 | 0.66 | 0.90707 |
Target: 5'- cUCgaaCCGcgGCGGCCacGGAGGaCCGCg -3' miRNA: 3'- aAGa--GGCugUGCCGGaaCUUCC-GGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 203121 | 0.66 | 0.900987 |
Target: 5'- --gUCCGGCgugcggucgaGCGGCCUcUGGAccGGCCGg -3' miRNA: 3'- aagAGGCUG----------UGCCGGA-ACUU--CCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 127787 | 0.66 | 0.929164 |
Target: 5'- -gCUCCGAC-CGGUa-UGucauGGCCGUg -3' miRNA: 3'- aaGAGGCUGuGCCGgaACuu--CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 46167 | 0.66 | 0.929671 |
Target: 5'- --gUUCGGcCACGGCCaaacacgcgacggcgUGggGGCCGa -3' miRNA: 3'- aagAGGCU-GUGCCGGa--------------ACuuCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 21966 | 0.66 | 0.923979 |
Target: 5'- ---gCCGuCGuCGGCaggacggUGAGGGCCGCc -3' miRNA: 3'- aagaGGCuGU-GCCGga-----ACUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 60960 | 0.66 | 0.929164 |
Target: 5'- -cCUCa-AgACGGUCUUGAAucgcgcguacGGCCGCa -3' miRNA: 3'- aaGAGgcUgUGCCGGAACUU----------CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 142759 | 0.66 | 0.918567 |
Target: 5'- cUCUCCcgcgacGACgACGGCCUgcUGguGGUgGCg -3' miRNA: 3'- aAGAGG------CUG-UGCCGGA--ACuuCCGgCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 139168 | 0.66 | 0.90707 |
Target: 5'- -aUUCCGucuacgaauucaGCACGGCCUccaacuuucucGAAuGGCCGCu -3' miRNA: 3'- aaGAGGC------------UGUGCCGGAa----------CUU-CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 152359 | 0.66 | 0.929164 |
Target: 5'- aUCUCCGACugcCGcGUCUUGAGcGCCu- -3' miRNA: 3'- aAGAGGCUGu--GC-CGGAACUUcCGGcg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 115842 | 0.66 | 0.90707 |
Target: 5'- aUCUCCu-CGCGGCC--GgcGGCgCGCu -3' miRNA: 3'- aAGAGGcuGUGCCGGaaCuuCCG-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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