miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 24114 0.66 0.929164
Target:  5'- ---gCCGACGuCGGCCUcGgcGGCC-Ca -3'
miRNA:   3'- aagaGGCUGU-GCCGGAaCuuCCGGcG- -5'
15741 3' -57.2 NC_004065.1 + 21966 0.66 0.923979
Target:  5'- ---gCCGuCGuCGGCaggacggUGAGGGCCGCc -3'
miRNA:   3'- aagaGGCuGU-GCCGga-----ACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 142759 0.66 0.918567
Target:  5'- cUCUCCcgcgacGACgACGGCCUgcUGguGGUgGCg -3'
miRNA:   3'- aAGAGG------CUG-UGCCGGA--ACuuCCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 57954 0.66 0.90707
Target:  5'- cUCgaaCCGcgGCGGCCacGGAGGaCCGCg -3'
miRNA:   3'- aAGa--GGCugUGCCGGaaCUUCC-GGCG- -5'
15741 3' -57.2 NC_004065.1 + 60960 0.66 0.929164
Target:  5'- -cCUCa-AgACGGUCUUGAAucgcgcguacGGCCGCa -3'
miRNA:   3'- aaGAGgcUgUGCCGGAACUU----------CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 149813 0.67 0.894684
Target:  5'- aUCUCCucGACAUGGUCUUGGAucuGGUCc- -3'
miRNA:   3'- aAGAGG--CUGUGCCGGAACUU---CCGGcg -5'
15741 3' -57.2 NC_004065.1 + 192722 0.67 0.894684
Target:  5'- ---gCCGACcgGgGGCuCUUG-AGGCCGCc -3'
miRNA:   3'- aagaGGCUG--UgCCG-GAACuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 121164 0.67 0.894684
Target:  5'- uUUC-CCGAUGC-GCCUcGAAGGCCa- -3'
miRNA:   3'- -AAGaGGCUGUGcCGGAaCUUCCGGcg -5'
15741 3' -57.2 NC_004065.1 + 204103 0.67 0.897231
Target:  5'- cUCUUCGccggcgggaaccugcGCAUGGCCUggcccgccGGGGCCGUg -3'
miRNA:   3'- aAGAGGC---------------UGUGCCGGAac------UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 31081 0.67 0.888164
Target:  5'- -cCUCaUGGCgGCGGCCUU---GGCCGCc -3'
miRNA:   3'- aaGAG-GCUG-UGCCGGAAcuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 191296 0.67 0.886834
Target:  5'- cUCUCUGAgGCGGagcaggauggUGccGGCCGCg -3'
miRNA:   3'- aAGAGGCUgUGCCgga-------ACuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 183514 0.67 0.881431
Target:  5'- ---aCCGACAgGGUCUcGAAcGGCuCGCg -3'
miRNA:   3'- aagaGGCUGUgCCGGAaCUU-CCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 119734 0.67 0.874488
Target:  5'- ---aCCGugACGGCC----GGGUCGCg -3'
miRNA:   3'- aagaGGCugUGCCGGaacuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 57651 0.67 0.873075
Target:  5'- aUCUCCGcCACGGgUUcguucuggggagagaUGAuccacugucaggugaGGGCCGCg -3'
miRNA:   3'- aAGAGGCuGUGCCgGA---------------ACU---------------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 205265 0.67 0.867341
Target:  5'- ---cCCG-CGcCGGCCaacgGggGGCCGCc -3'
miRNA:   3'- aagaGGCuGU-GCCGGaa--CuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 150012 0.67 0.888164
Target:  5'- gUCaUCCGACgucugGCGGCUcgGAAGGaggaacugcCCGCg -3'
miRNA:   3'- aAG-AGGCUG-----UGCCGGaaCUUCC---------GGCG- -5'
15741 3' -57.2 NC_004065.1 + 6209 0.67 0.894684
Target:  5'- -cCUCCGACAgGGUCgUGuucuaucuGCCGCa -3'
miRNA:   3'- aaGAGGCUGUgCCGGaACuuc-----CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 186126 0.67 0.884149
Target:  5'- cUUCcCCGAauaCAgaagaacccugagggUGGCCgUGGAGGCCGCc -3'
miRNA:   3'- -AAGaGGCU---GU---------------GCCGGaACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 86741 0.67 0.894684
Target:  5'- ---cCCGACGCcgccucGGcCCUUGAAGcuGCCGCc -3'
miRNA:   3'- aagaGGCUGUG------CC-GGAACUUC--CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 89762 0.68 0.844721
Target:  5'- ----aCGACGCGGCgUUGAugaGGGCCa- -3'
miRNA:   3'- aagagGCUGUGCCGgAACU---UCCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.