Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15741 | 3' | -57.2 | NC_004065.1 | + | 207975 | 0.68 | 0.844721 |
Target: 5'- ---aCCGACcggagggauaccGCGGCCUgcccGGGGCCGUg -3' miRNA: 3'- aagaGGCUG------------UGCCGGAac--UUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 162506 | 0.68 | 0.828719 |
Target: 5'- gUCUCCGAuCAUGGCCccGAAGaacgacagcGCCGa -3' miRNA: 3'- aAGAGGCU-GUGCCGGaaCUUC---------CGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 68525 | 0.68 | 0.836808 |
Target: 5'- aUCUcCCGGa--GGCCgaGGAGGCgGCg -3' miRNA: 3'- aAGA-GGCUgugCCGGaaCUUCCGgCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 77959 | 0.68 | 0.859993 |
Target: 5'- ---gCgGACGCGGUCgUGGAGcGCCGUg -3' miRNA: 3'- aagaGgCUGUGCCGGaACUUC-CGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 95194 | 0.68 | 0.844721 |
Target: 5'- gUCUCCGGgGgaGGCCgaGAGGuGCCuGCa -3' miRNA: 3'- aAGAGGCUgUg-CCGGaaCUUC-CGG-CG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 169223 | 0.68 | 0.842366 |
Target: 5'- -gCUCCGGCGacaagaugUGGCUcauguucgcgaggcgGGAGGCCGCg -3' miRNA: 3'- aaGAGGCUGU--------GCCGGaa-------------CUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 143623 | 0.68 | 0.844721 |
Target: 5'- cUCUcCCGACAgCGGUCUauaacUGA-GGCCGa -3' miRNA: 3'- aAGA-GGCUGU-GCCGGA-----ACUuCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 192557 | 0.68 | 0.844721 |
Target: 5'- cUCguuagugCCGACACGGCUcUGAuacaccGGCUGUc -3' miRNA: 3'- aAGa------GGCUGUGCCGGaACUu-----CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 109961 | 0.68 | 0.852452 |
Target: 5'- cUCUCCGGCGCGGUCUccgacgacguccUGgcGcucuggacGCUGCg -3' miRNA: 3'- aAGAGGCUGUGCCGGA------------ACuuC--------CGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 89762 | 0.68 | 0.844721 |
Target: 5'- ----aCGACGCGGCgUUGAugaGGGCCa- -3' miRNA: 3'- aagagGCUGUGCCGgAACU---UCCGGcg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 208936 | 0.68 | 0.844721 |
Target: 5'- cUCUCCgucGugGCGGCCgaacUGuucGGCUGCc -3' miRNA: 3'- aAGAGG---CugUGCCGGa---ACuu-CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 113933 | 0.68 | 0.844721 |
Target: 5'- gUCgaCGACGCGGCgCUcGggGGCUGg -3' miRNA: 3'- aAGagGCUGUGCCG-GAaCuuCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 128381 | 0.68 | 0.844721 |
Target: 5'- -gCUUCGGCGgcgagagcCGGCUgUGggGGCCGa -3' miRNA: 3'- aaGAGGCUGU--------GCCGGaACuuCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 200997 | 0.68 | 0.828719 |
Target: 5'- --gUCgCGACGcCGGUCUgacucGAGGCCGCg -3' miRNA: 3'- aagAG-GCUGU-GCCGGAac---UUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 117984 | 0.68 | 0.820461 |
Target: 5'- -aCUCCGu--CGGCCgauucGGCCGCg -3' miRNA: 3'- aaGAGGCuguGCCGGaacuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 141407 | 0.69 | 0.809484 |
Target: 5'- aUC-CCGAgcugGCGGCCaucgccgagcucaugGAGGGCCGCg -3' miRNA: 3'- aAGaGGCUg---UGCCGGaa-------------CUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 62470 | 0.69 | 0.785886 |
Target: 5'- ---aCCGGCgACGGCag-GAGcGGCCGCg -3' miRNA: 3'- aagaGGCUG-UGCCGgaaCUU-CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 34651 | 0.69 | 0.776896 |
Target: 5'- cUCggCCGuCACGGUgUccagGAAGGCCGUc -3' miRNA: 3'- aAGa-GGCuGUGCCGgAa---CUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 131540 | 0.69 | 0.783203 |
Target: 5'- cUCUCCGgcgagcacauguACACGGCCaUGAucagggcgaccaccAGGUCGUc -3' miRNA: 3'- aAGAGGC------------UGUGCCGGaACU--------------UCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 115036 | 0.69 | 0.776896 |
Target: 5'- --aUCCG-CGCGGCCgccAGGGCCGa -3' miRNA: 3'- aagAGGCuGUGCCGGaacUUCCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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