Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15741 | 3' | -57.2 | NC_004065.1 | + | 162506 | 0.68 | 0.828719 |
Target: 5'- gUCUCCGAuCAUGGCCccGAAGaacgacagcGCCGa -3' miRNA: 3'- aAGAGGCU-GUGCCGGaaCUUC---------CGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 18326 | 0.68 | 0.857751 |
Target: 5'- gUUCUCCGAggagaugguaGCGGCCUcgaaagcGAggcaggcucaaaagAGGCCGCu -3' miRNA: 3'- -AAGAGGCUg---------UGCCGGAa------CU--------------UCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 207975 | 0.68 | 0.844721 |
Target: 5'- ---aCCGACcggagggauaccGCGGCCUgcccGGGGCCGUg -3' miRNA: 3'- aagaGGCUG------------UGCCGGAac--UUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 143623 | 0.68 | 0.844721 |
Target: 5'- cUCUcCCGACAgCGGUCUauaacUGA-GGCCGa -3' miRNA: 3'- aAGA-GGCUGU-GCCGGA-----ACUuCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 192557 | 0.68 | 0.844721 |
Target: 5'- cUCguuagugCCGACACGGCUcUGAuacaccGGCUGUc -3' miRNA: 3'- aAGa------GGCUGUGCCGGaACUu-----CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 208936 | 0.68 | 0.844721 |
Target: 5'- cUCUCCgucGugGCGGCCgaacUGuucGGCUGCc -3' miRNA: 3'- aAGAGG---CugUGCCGGa---ACuu-CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 89762 | 0.68 | 0.844721 |
Target: 5'- ----aCGACGCGGCgUUGAugaGGGCCa- -3' miRNA: 3'- aagagGCUGUGCCGgAACU---UCCGGcg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 109961 | 0.68 | 0.852452 |
Target: 5'- cUCUCCGGCGCGGUCUccgacgacguccUGgcGcucuggacGCUGCg -3' miRNA: 3'- aAGAGGCUGUGCCGGA------------ACuuC--------CGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 128381 | 0.68 | 0.844721 |
Target: 5'- -gCUUCGGCGgcgagagcCGGCUgUGggGGCCGa -3' miRNA: 3'- aaGAGGCUGU--------GCCGGaACuuCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 200997 | 0.68 | 0.828719 |
Target: 5'- --gUCgCGACGcCGGUCUgacucGAGGCCGCg -3' miRNA: 3'- aagAG-GCUGU-GCCGGAac---UUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 95194 | 0.68 | 0.844721 |
Target: 5'- gUCUCCGGgGgaGGCCgaGAGGuGCCuGCa -3' miRNA: 3'- aAGAGGCUgUg-CCGGaaCUUC-CGG-CG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 68525 | 0.68 | 0.836808 |
Target: 5'- aUCUcCCGGa--GGCCgaGGAGGCgGCg -3' miRNA: 3'- aAGA-GGCUgugCCGGaaCUUCCGgCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 169223 | 0.68 | 0.842366 |
Target: 5'- -gCUCCGGCGacaagaugUGGCUcauguucgcgaggcgGGAGGCCGCg -3' miRNA: 3'- aaGAGGCUGU--------GCCGGaa-------------CUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 86741 | 0.67 | 0.894684 |
Target: 5'- ---cCCGACGCcgccucGGcCCUUGAAGcuGCCGCc -3' miRNA: 3'- aagaGGCUGUG------CC-GGAACUUC--CGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 205265 | 0.67 | 0.867341 |
Target: 5'- ---cCCG-CGcCGGCCaacgGggGGCCGCc -3' miRNA: 3'- aagaGGCuGU-GCCGGaa--CuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 186126 | 0.67 | 0.884149 |
Target: 5'- cUUCcCCGAauaCAgaagaacccugagggUGGCCgUGGAGGCCGCc -3' miRNA: 3'- -AAGaGGCU---GU---------------GCCGGaACUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 191296 | 0.67 | 0.886834 |
Target: 5'- cUCUCUGAgGCGGagcaggauggUGccGGCCGCg -3' miRNA: 3'- aAGAGGCUgUGCCgga-------ACuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 31081 | 0.67 | 0.888164 |
Target: 5'- -cCUCaUGGCgGCGGCCUU---GGCCGCc -3' miRNA: 3'- aaGAG-GCUG-UGCCGGAAcuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 149813 | 0.67 | 0.894684 |
Target: 5'- aUCUCCucGACAUGGUCUUGGAucuGGUCc- -3' miRNA: 3'- aAGAGG--CUGUGCCGGAACUU---CCGGcg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 57651 | 0.67 | 0.873075 |
Target: 5'- aUCUCCGcCACGGgUUcguucuggggagagaUGAuccacugucaggugaGGGCCGCg -3' miRNA: 3'- aAGAGGCuGUGCCgGA---------------ACU---------------UCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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