miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 161244 1.08 0.003693
Target:  5'- gUUCUCCGACACGGCCUUGAAGGCCGCc -3'
miRNA:   3'- -AAGAGGCUGUGCCGGAACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 140843 0.89 0.06639
Target:  5'- cUCUCCGACaagaagACGGCCcUGAAGGCCGCc -3'
miRNA:   3'- aAGAGGCUG------UGCCGGaACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 88216 0.74 0.505099
Target:  5'- gUCUCCGACGCGGCUaacAGGaGCCGg -3'
miRNA:   3'- aAGAGGCUGUGCCGGaacUUC-CGGCg -5'
15741 3' -57.2 NC_004065.1 + 165147 0.74 0.533667
Target:  5'- cUUCUCCGACGCGcGCCgc---GGuCCGCa -3'
miRNA:   3'- -AAGAGGCUGUGC-CGGaacuuCC-GGCG- -5'
15741 3' -57.2 NC_004065.1 + 28990 0.73 0.572596
Target:  5'- gUCUCCGGCgGCGGUggcGAGGcGCCGCg -3'
miRNA:   3'- aAGAGGCUG-UGCCGgaaCUUC-CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 89165 0.73 0.582442
Target:  5'- cUCgCUGGCgGCGGCCUUcAGGGCCGUc -3'
miRNA:   3'- aAGaGGCUG-UGCCGGAAcUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 68757 0.73 0.58639
Target:  5'- -aCUCgGACaucgcggcggugcugGCGGCCUUcAAGGCCGUg -3'
miRNA:   3'- aaGAGgCUG---------------UGCCGGAAcUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 162755 0.72 0.602229
Target:  5'- gUCUCCG-C-CGuGCCgUUGAAcGGCCGCg -3'
miRNA:   3'- aAGAGGCuGuGC-CGG-AACUU-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 20649 0.72 0.602229
Target:  5'- gUCUCCGuCGCaGGCCUcGGAGuaCGCg -3'
miRNA:   3'- aAGAGGCuGUG-CCGGAaCUUCcgGCG- -5'
15741 3' -57.2 NC_004065.1 + 139370 0.72 0.612157
Target:  5'- cUCUCCaccaccgacGACGCGGUCUgauGGGGUCGCg -3'
miRNA:   3'- aAGAGG---------CUGUGCCGGAac-UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 22031 0.72 0.612157
Target:  5'- ---cCCGGcCACGGCCccgGGcAGGCCGCg -3'
miRNA:   3'- aagaGGCU-GUGCCGGaa-CU-UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 77600 0.72 0.612157
Target:  5'- ---cCCGACGacgcaGGCCUUGGuuuuGGCCGUg -3'
miRNA:   3'- aagaGGCUGUg----CCGGAACUu---CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 151510 0.72 0.632049
Target:  5'- gUCUCCGACAucgccaucCGcGCCcUGGacggcggcaaGGGCCGCa -3'
miRNA:   3'- aAGAGGCUGU--------GC-CGGaACU----------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 115056 0.72 0.632049
Target:  5'- cUCUCCGAacucauCGGUUcUGGAGGCCGg -3'
miRNA:   3'- aAGAGGCUgu----GCCGGaACUUCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 92062 0.71 0.671773
Target:  5'- aUCUC--ACGCGcGCUcgGAGGGCCGCg -3'
miRNA:   3'- aAGAGgcUGUGC-CGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 11561 0.71 0.681647
Target:  5'- uUUUUCCGuguggaucaacaACACGGCCaUGAcuaguuuauGGCCGCa -3'
miRNA:   3'- -AAGAGGC------------UGUGCCGGaACUu--------CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 182167 0.71 0.681647
Target:  5'- cUUCUCCcacuacGACGCcGCCaacaucaUGAGGGCCGCu -3'
miRNA:   3'- -AAGAGG------CUGUGcCGGa------ACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 159712 0.71 0.698341
Target:  5'- gUUC-CUGuACGCGGCCgUguggggggugcugcUGAAGGCCGCc -3'
miRNA:   3'- -AAGaGGC-UGUGCCGG-A--------------ACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 46877 0.71 0.700296
Target:  5'- aUCcuggCCGugacggcgaggauGCACGGCUggaGggGGCCGCg -3'
miRNA:   3'- aAGa---GGC-------------UGUGCCGGaa-CuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 208067 0.7 0.720676
Target:  5'- gUCcugCCGACgACGGCCcu---GGCCGCg -3'
miRNA:   3'- aAGa--GGCUG-UGCCGGaacuuCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.