Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15741 | 3' | -57.2 | NC_004065.1 | + | 99097 | 0.7 | 0.729319 |
Target: 5'- gUCUCgGGCGCGGCCguauaaaccccguUUGAcGGCaaCGCa -3' miRNA: 3'- aAGAGgCUGUGCCGG-------------AACUuCCG--GCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 169592 | 0.7 | 0.730275 |
Target: 5'- -gCUCCGGC-CGGUUcgcGggGGCCGUc -3' miRNA: 3'- aaGAGGCUGuGCCGGaa-CuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 132861 | 0.7 | 0.738846 |
Target: 5'- aUUCuUCCGuaaagaucggcuuGCGCGGCCa-GAGGGUCGCc -3' miRNA: 3'- -AAG-AGGC-------------UGUGCCGGaaCUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 33655 | 0.7 | 0.739794 |
Target: 5'- -gCUUCGACcgucCGGCgCgcgggGAGGGCCGCu -3' miRNA: 3'- aaGAGGCUGu---GCCG-Gaa---CUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 61042 | 0.7 | 0.739794 |
Target: 5'- cUCUCgGACACGcucGCCgUGAGGGCaCGa -3' miRNA: 3'- aAGAGgCUGUGC---CGGaACUUCCG-GCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 36105 | 0.69 | 0.776896 |
Target: 5'- ---aCCGugGCGGCaac-GGGGCCGCu -3' miRNA: 3'- aagaGGCugUGCCGgaacUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 34651 | 0.69 | 0.776896 |
Target: 5'- cUCggCCGuCACGGUgUccagGAAGGCCGUc -3' miRNA: 3'- aAGa-GGCuGUGCCGgAa---CUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 115036 | 0.69 | 0.776896 |
Target: 5'- --aUCCG-CGCGGCCgccAGGGCCGa -3' miRNA: 3'- aagAGGCuGUGCCGGaacUUCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 131540 | 0.69 | 0.783203 |
Target: 5'- cUCUCCGgcgagcacauguACACGGCCaUGAucagggcgaccaccAGGUCGUc -3' miRNA: 3'- aAGAGGC------------UGUGCCGGaACU--------------UCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 62470 | 0.69 | 0.785886 |
Target: 5'- ---aCCGGCgACGGCag-GAGcGGCCGCg -3' miRNA: 3'- aagaGGCUG-UGCCGgaaCUU-CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 160984 | 0.69 | 0.785886 |
Target: 5'- aUCUCCGGCgGCGGC-----GGGCUGCu -3' miRNA: 3'- aAGAGGCUG-UGCCGgaacuUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 75667 | 0.69 | 0.794746 |
Target: 5'- gUCggCGAgGCGGCCgcgggcUGAuucuuGGCCGCg -3' miRNA: 3'- aAGagGCUgUGCCGGa-----ACUu----CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 143293 | 0.69 | 0.794746 |
Target: 5'- ---gCCGAgGCGGCgUcGggGGCCGg -3' miRNA: 3'- aagaGGCUgUGCCGgAaCuuCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 90823 | 0.69 | 0.794746 |
Target: 5'- gUUCU-UGACgaGCGGCCauucgagaaagUUGGAGGCCGUg -3' miRNA: 3'- -AAGAgGCUG--UGCCGG-----------AACUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 182613 | 0.69 | 0.794746 |
Target: 5'- --gUCCGAUGCGcuucaguaGCCggGAAGGUCGCu -3' miRNA: 3'- aagAGGCUGUGC--------CGGaaCUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 141407 | 0.69 | 0.809484 |
Target: 5'- aUC-CCGAgcugGCGGCCaucgccgagcucaugGAGGGCCGCg -3' miRNA: 3'- aAGaGGCUg---UGCCGGaa-------------CUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 214571 | 0.69 | 0.812041 |
Target: 5'- cUCUCCGuCACGGCUUccaGAuaaaaGCCGCc -3' miRNA: 3'- aAGAGGCuGUGCCGGAa--CUuc---CGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 117984 | 0.68 | 0.820461 |
Target: 5'- -aCUCCGu--CGGCCgauucGGCCGCg -3' miRNA: 3'- aaGAGGCuguGCCGGaacuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 200997 | 0.68 | 0.828719 |
Target: 5'- --gUCgCGACGcCGGUCUgacucGAGGCCGCg -3' miRNA: 3'- aagAG-GCUGU-GCCGGAac---UUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 162506 | 0.68 | 0.828719 |
Target: 5'- gUCUCCGAuCAUGGCCccGAAGaacgacagcGCCGa -3' miRNA: 3'- aAGAGGCU-GUGCCGGaaCUUC---------CGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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