miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 31081 0.67 0.888164
Target:  5'- -cCUCaUGGCgGCGGCCUU---GGCCGCc -3'
miRNA:   3'- aaGAG-GCUG-UGCCGGAAcuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 86741 0.67 0.894684
Target:  5'- ---cCCGACGCcgccucGGcCCUUGAAGcuGCCGCc -3'
miRNA:   3'- aagaGGCUGUG------CC-GGAACUUC--CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 6209 0.67 0.894684
Target:  5'- -cCUCCGACAgGGUCgUGuucuaucuGCCGCa -3'
miRNA:   3'- aaGAGGCUGUgCCGGaACuuc-----CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 192722 0.67 0.894684
Target:  5'- ---gCCGACcgGgGGCuCUUG-AGGCCGCc -3'
miRNA:   3'- aagaGGCUG--UgCCG-GAACuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 149813 0.67 0.894684
Target:  5'- aUCUCCucGACAUGGUCUUGGAucuGGUCc- -3'
miRNA:   3'- aAGAGG--CUGUGCCGGAACUU---CCGGcg -5'
15741 3' -57.2 NC_004065.1 + 121164 0.67 0.894684
Target:  5'- uUUC-CCGAUGC-GCCUcGAAGGCCa- -3'
miRNA:   3'- -AAGaGGCUGUGcCGGAaCUUCCGGcg -5'
15741 3' -57.2 NC_004065.1 + 204103 0.67 0.897231
Target:  5'- cUCUUCGccggcgggaaccugcGCAUGGCCUggcccgccGGGGCCGUg -3'
miRNA:   3'- aAGAGGC---------------UGUGCCGGAac------UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 203121 0.66 0.900987
Target:  5'- --gUCCGGCgugcggucgaGCGGCCUcUGGAccGGCCGg -3'
miRNA:   3'- aagAGGCUG----------UGCCGGA-ACUU--CCGGCg -5'
15741 3' -57.2 NC_004065.1 + 81881 0.66 0.900987
Target:  5'- gUUCUCgGGCACGGCgggcgUGcuGAGGUCGg -3'
miRNA:   3'- -AAGAGgCUGUGCCGga---AC--UUCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 75570 0.66 0.900987
Target:  5'- cUCggcggCCGugACGuucgugucGCCggcggggGGAGGCCGCu -3'
miRNA:   3'- aAGa----GGCugUGC--------CGGaa-----CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 165868 0.66 0.90707
Target:  5'- gUCUCU--CACGGUCccGAaggcgAGGCCGCa -3'
miRNA:   3'- aAGAGGcuGUGCCGGaaCU-----UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 57954 0.66 0.90707
Target:  5'- cUCgaaCCGcgGCGGCCacGGAGGaCCGCg -3'
miRNA:   3'- aAGa--GGCugUGCCGGaaCUUCC-GGCG- -5'
15741 3' -57.2 NC_004065.1 + 115842 0.66 0.90707
Target:  5'- aUCUCCu-CGCGGCC--GgcGGCgCGCu -3'
miRNA:   3'- aAGAGGcuGUGCCGGaaCuuCCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 139168 0.66 0.90707
Target:  5'- -aUUCCGucuacgaauucaGCACGGCCUccaacuuucucGAAuGGCCGCu -3'
miRNA:   3'- aaGAGGC------------UGUGCCGGAa----------CUU-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 126735 0.66 0.909441
Target:  5'- -cCUgCCGcCGCGGCCUcGAagaaccugaaguucgAGGCCGg -3'
miRNA:   3'- aaGA-GGCuGUGCCGGAaCU---------------UCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 169489 0.66 0.912931
Target:  5'- gUCUCCG--GCGGCUUcGucGGCUGUa -3'
miRNA:   3'- aAGAGGCugUGCCGGAaCuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 99967 0.66 0.912931
Target:  5'- ---aCCGcCGCGGCgUgcucGGGCCGCg -3'
miRNA:   3'- aagaGGCuGUGCCGgAacu-UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 60733 0.66 0.912931
Target:  5'- cUUCUCguaGACguuACGGaaggaCUUGAggucgAGGCCGCa -3'
miRNA:   3'- -AAGAGg--CUG---UGCCg----GAACU-----UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 35939 0.66 0.912931
Target:  5'- -gCUCUGuCGCGGCCgc--AGGUCGUc -3'
miRNA:   3'- aaGAGGCuGUGCCGGaacuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 111046 0.66 0.918567
Target:  5'- --gUCUGGCACcGCCguaacGGAGGCgCGCg -3'
miRNA:   3'- aagAGGCUGUGcCGGaa---CUUCCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.