miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 18326 0.68 0.857751
Target:  5'- gUUCUCCGAggagaugguaGCGGCCUcgaaagcGAggcaggcucaaaagAGGCCGCu -3'
miRNA:   3'- -AAGAGGCUg---------UGCCGGAa------CU--------------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 109961 0.68 0.852452
Target:  5'- cUCUCCGGCGCGGUCUccgacgacguccUGgcGcucuggacGCUGCg -3'
miRNA:   3'- aAGAGGCUGUGCCGGA------------ACuuC--------CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 143623 0.68 0.844721
Target:  5'- cUCUcCCGACAgCGGUCUauaacUGA-GGCCGa -3'
miRNA:   3'- aAGA-GGCUGU-GCCGGA-----ACUuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 207975 0.68 0.844721
Target:  5'- ---aCCGACcggagggauaccGCGGCCUgcccGGGGCCGUg -3'
miRNA:   3'- aagaGGCUG------------UGCCGGAac--UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 128381 0.68 0.844721
Target:  5'- -gCUUCGGCGgcgagagcCGGCUgUGggGGCCGa -3'
miRNA:   3'- aaGAGGCUGU--------GCCGGaACuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 113933 0.68 0.844721
Target:  5'- gUCgaCGACGCGGCgCUcGggGGCUGg -3'
miRNA:   3'- aAGagGCUGUGCCG-GAaCuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 208936 0.68 0.844721
Target:  5'- cUCUCCgucGugGCGGCCgaacUGuucGGCUGCc -3'
miRNA:   3'- aAGAGG---CugUGCCGGa---ACuu-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 89762 0.68 0.844721
Target:  5'- ----aCGACGCGGCgUUGAugaGGGCCa- -3'
miRNA:   3'- aagagGCUGUGCCGgAACU---UCCGGcg -5'
15741 3' -57.2 NC_004065.1 + 95194 0.68 0.844721
Target:  5'- gUCUCCGGgGgaGGCCgaGAGGuGCCuGCa -3'
miRNA:   3'- aAGAGGCUgUg-CCGGaaCUUC-CGG-CG- -5'
15741 3' -57.2 NC_004065.1 + 192557 0.68 0.844721
Target:  5'- cUCguuagugCCGACACGGCUcUGAuacaccGGCUGUc -3'
miRNA:   3'- aAGa------GGCUGUGCCGGaACUu-----CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 169223 0.68 0.842366
Target:  5'- -gCUCCGGCGacaagaugUGGCUcauguucgcgaggcgGGAGGCCGCg -3'
miRNA:   3'- aaGAGGCUGU--------GCCGGaa-------------CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 68525 0.68 0.836808
Target:  5'- aUCUcCCGGa--GGCCgaGGAGGCgGCg -3'
miRNA:   3'- aAGA-GGCUgugCCGGaaCUUCCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 200997 0.68 0.828719
Target:  5'- --gUCgCGACGcCGGUCUgacucGAGGCCGCg -3'
miRNA:   3'- aagAG-GCUGU-GCCGGAac---UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 162506 0.68 0.828719
Target:  5'- gUCUCCGAuCAUGGCCccGAAGaacgacagcGCCGa -3'
miRNA:   3'- aAGAGGCU-GUGCCGGaaCUUC---------CGGCg -5'
15741 3' -57.2 NC_004065.1 + 117984 0.68 0.820461
Target:  5'- -aCUCCGu--CGGCCgauucGGCCGCg -3'
miRNA:   3'- aaGAGGCuguGCCGGaacuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 214571 0.69 0.812041
Target:  5'- cUCUCCGuCACGGCUUccaGAuaaaaGCCGCc -3'
miRNA:   3'- aAGAGGCuGUGCCGGAa--CUuc---CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 141407 0.69 0.809484
Target:  5'- aUC-CCGAgcugGCGGCCaucgccgagcucaugGAGGGCCGCg -3'
miRNA:   3'- aAGaGGCUg---UGCCGGaa-------------CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 182613 0.69 0.794746
Target:  5'- --gUCCGAUGCGcuucaguaGCCggGAAGGUCGCu -3'
miRNA:   3'- aagAGGCUGUGC--------CGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 90823 0.69 0.794746
Target:  5'- gUUCU-UGACgaGCGGCCauucgagaaagUUGGAGGCCGUg -3'
miRNA:   3'- -AAGAgGCUG--UGCCGG-----------AACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 143293 0.69 0.794746
Target:  5'- ---gCCGAgGCGGCgUcGggGGCCGg -3'
miRNA:   3'- aagaGGCUgUGCCGgAaCuuCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.