miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 6209 0.67 0.894684
Target:  5'- -cCUCCGACAgGGUCgUGuucuaucuGCCGCa -3'
miRNA:   3'- aaGAGGCUGUgCCGGaACuuc-----CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 11561 0.71 0.681647
Target:  5'- uUUUUCCGuguggaucaacaACACGGCCaUGAcuaguuuauGGCCGCa -3'
miRNA:   3'- -AAGAGGC------------UGUGCCGGaACUu--------CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 18326 0.68 0.857751
Target:  5'- gUUCUCCGAggagaugguaGCGGCCUcgaaagcGAggcaggcucaaaagAGGCCGCu -3'
miRNA:   3'- -AAGAGGCUg---------UGCCGGAa------CU--------------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 20649 0.72 0.602229
Target:  5'- gUCUCCGuCGCaGGCCUcGGAGuaCGCg -3'
miRNA:   3'- aAGAGGCuGUG-CCGGAaCUUCcgGCG- -5'
15741 3' -57.2 NC_004065.1 + 21966 0.66 0.923979
Target:  5'- ---gCCGuCGuCGGCaggacggUGAGGGCCGCc -3'
miRNA:   3'- aagaGGCuGU-GCCGga-----ACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 22031 0.72 0.612157
Target:  5'- ---cCCGGcCACGGCCccgGGcAGGCCGCg -3'
miRNA:   3'- aagaGGCU-GUGCCGGaa-CU-UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 22557 0.66 0.918567
Target:  5'- -aCUCCGACGCGGCacaGAcagaucAGcGCaCGCu -3'
miRNA:   3'- aaGAGGCUGUGCCGgaaCU------UC-CG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 24114 0.66 0.929164
Target:  5'- ---gCCGACGuCGGCCUcGgcGGCC-Ca -3'
miRNA:   3'- aagaGGCUGU-GCCGGAaCuuCCGGcG- -5'
15741 3' -57.2 NC_004065.1 + 26892 0.66 0.929164
Target:  5'- ---gCCGGC-CGGUCca-GAGGCCGCu -3'
miRNA:   3'- aagaGGCUGuGCCGGaacUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 28990 0.73 0.572596
Target:  5'- gUCUCCGGCgGCGGUggcGAGGcGCCGCg -3'
miRNA:   3'- aAGAGGCUG-UGCCGgaaCUUC-CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 31081 0.67 0.888164
Target:  5'- -cCUCaUGGCgGCGGCCUU---GGCCGCc -3'
miRNA:   3'- aaGAG-GCUG-UGCCGGAAcuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 33655 0.7 0.739794
Target:  5'- -gCUUCGACcgucCGGCgCgcgggGAGGGCCGCu -3'
miRNA:   3'- aaGAGGCUGu---GCCG-Gaa---CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 34651 0.69 0.776896
Target:  5'- cUCggCCGuCACGGUgUccagGAAGGCCGUc -3'
miRNA:   3'- aAGa-GGCuGUGCCGgAa---CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 35939 0.66 0.912931
Target:  5'- -gCUCUGuCGCGGCCgc--AGGUCGUc -3'
miRNA:   3'- aaGAGGCuGUGCCGGaacuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 36105 0.69 0.776896
Target:  5'- ---aCCGugGCGGCaac-GGGGCCGCu -3'
miRNA:   3'- aagaGGCugUGCCGgaacUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 46167 0.66 0.929671
Target:  5'- --gUUCGGcCACGGCCaaacacgcgacggcgUGggGGCCGa -3'
miRNA:   3'- aagAGGCU-GUGCCGGa--------------ACuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 46877 0.71 0.700296
Target:  5'- aUCcuggCCGugacggcgaggauGCACGGCUggaGggGGCCGCg -3'
miRNA:   3'- aAGa---GGC-------------UGUGCCGGaa-CuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 57651 0.67 0.873075
Target:  5'- aUCUCCGcCACGGgUUcguucuggggagagaUGAuccacugucaggugaGGGCCGCg -3'
miRNA:   3'- aAGAGGCuGUGCCgGA---------------ACU---------------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 57954 0.66 0.90707
Target:  5'- cUCgaaCCGcgGCGGCCacGGAGGaCCGCg -3'
miRNA:   3'- aAGa--GGCugUGCCGGaaCUUCC-GGCG- -5'
15741 3' -57.2 NC_004065.1 + 60733 0.66 0.912931
Target:  5'- cUUCUCguaGACguuACGGaaggaCUUGAggucgAGGCCGCa -3'
miRNA:   3'- -AAGAGg--CUG---UGCCg----GAACU-----UCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.