miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 60960 0.66 0.929164
Target:  5'- -cCUCa-AgACGGUCUUGAAucgcgcguacGGCCGCa -3'
miRNA:   3'- aaGAGgcUgUGCCGGAACUU----------CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 61042 0.7 0.739794
Target:  5'- cUCUCgGACACGcucGCCgUGAGGGCaCGa -3'
miRNA:   3'- aAGAGgCUGUGC---CGGaACUUCCG-GCg -5'
15741 3' -57.2 NC_004065.1 + 62470 0.69 0.785886
Target:  5'- ---aCCGGCgACGGCag-GAGcGGCCGCg -3'
miRNA:   3'- aagaGGCUG-UGCCGgaaCUU-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 68525 0.68 0.836808
Target:  5'- aUCUcCCGGa--GGCCgaGGAGGCgGCg -3'
miRNA:   3'- aAGA-GGCUgugCCGGaaCUUCCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 68757 0.73 0.58639
Target:  5'- -aCUCgGACaucgcggcggugcugGCGGCCUUcAAGGCCGUg -3'
miRNA:   3'- aaGAGgCUG---------------UGCCGGAAcUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 75570 0.66 0.900987
Target:  5'- cUCggcggCCGugACGuucgugucGCCggcggggGGAGGCCGCu -3'
miRNA:   3'- aAGa----GGCugUGC--------CGGaa-----CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 75667 0.69 0.794746
Target:  5'- gUCggCGAgGCGGCCgcgggcUGAuucuuGGCCGCg -3'
miRNA:   3'- aAGagGCUgUGCCGGa-----ACUu----CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 77600 0.72 0.612157
Target:  5'- ---cCCGACGacgcaGGCCUUGGuuuuGGCCGUg -3'
miRNA:   3'- aagaGGCUGUg----CCGGAACUu---CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 77959 0.68 0.859993
Target:  5'- ---gCgGACGCGGUCgUGGAGcGCCGUg -3'
miRNA:   3'- aagaGgCUGUGCCGGaACUUC-CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 79164 0.66 0.929164
Target:  5'- cUUCUCCauGAUcaACGGCacgGAGGGCgCGUg -3'
miRNA:   3'- -AAGAGG--CUG--UGCCGgaaCUUCCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 81881 0.66 0.900987
Target:  5'- gUUCUCgGGCACGGCgggcgUGcuGAGGUCGg -3'
miRNA:   3'- -AAGAGgCUGUGCCGga---AC--UUCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 86741 0.67 0.894684
Target:  5'- ---cCCGACGCcgccucGGcCCUUGAAGcuGCCGCc -3'
miRNA:   3'- aagaGGCUGUG------CC-GGAACUUC--CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 88216 0.74 0.505099
Target:  5'- gUCUCCGACGCGGCUaacAGGaGCCGg -3'
miRNA:   3'- aAGAGGCUGUGCCGGaacUUC-CGGCg -5'
15741 3' -57.2 NC_004065.1 + 89165 0.73 0.582442
Target:  5'- cUCgCUGGCgGCGGCCUUcAGGGCCGUc -3'
miRNA:   3'- aAGaGGCUG-UGCCGGAAcUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 89762 0.68 0.844721
Target:  5'- ----aCGACGCGGCgUUGAugaGGGCCa- -3'
miRNA:   3'- aagagGCUGUGCCGgAACU---UCCGGcg -5'
15741 3' -57.2 NC_004065.1 + 90823 0.69 0.794746
Target:  5'- gUUCU-UGACgaGCGGCCauucgagaaagUUGGAGGCCGUg -3'
miRNA:   3'- -AAGAgGCUG--UGCCGG-----------AACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 92062 0.71 0.671773
Target:  5'- aUCUC--ACGCGcGCUcgGAGGGCCGCg -3'
miRNA:   3'- aAGAGgcUGUGC-CGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 95194 0.68 0.844721
Target:  5'- gUCUCCGGgGgaGGCCgaGAGGuGCCuGCa -3'
miRNA:   3'- aAGAGGCUgUg-CCGGaaCUUC-CGG-CG- -5'
15741 3' -57.2 NC_004065.1 + 99097 0.7 0.729319
Target:  5'- gUCUCgGGCGCGGCCguauaaaccccguUUGAcGGCaaCGCa -3'
miRNA:   3'- aAGAGgCUGUGCCGG-------------AACUuCCG--GCG- -5'
15741 3' -57.2 NC_004065.1 + 99967 0.66 0.912931
Target:  5'- ---aCCGcCGCGGCgUgcucGGGCCGCg -3'
miRNA:   3'- aagaGGCuGUGCCGgAacu-UCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.