miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 109961 0.68 0.852452
Target:  5'- cUCUCCGGCGCGGUCUccgacgacguccUGgcGcucuggacGCUGCg -3'
miRNA:   3'- aAGAGGCUGUGCCGGA------------ACuuC--------CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 111046 0.66 0.918567
Target:  5'- --gUCUGGCACcGCCguaacGGAGGCgCGCg -3'
miRNA:   3'- aagAGGCUGUGcCGGaa---CUUCCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 113746 0.66 0.918567
Target:  5'- -aCUCCGGCGaggaGGCCgagGGAcagcgcGGCgGCa -3'
miRNA:   3'- aaGAGGCUGUg---CCGGaa-CUU------CCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 113933 0.68 0.844721
Target:  5'- gUCgaCGACGCGGCgCUcGggGGCUGg -3'
miRNA:   3'- aAGagGCUGUGCCG-GAaCuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 115036 0.69 0.776896
Target:  5'- --aUCCG-CGCGGCCgccAGGGCCGa -3'
miRNA:   3'- aagAGGCuGUGCCGGaacUUCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 115056 0.72 0.632049
Target:  5'- cUCUCCGAacucauCGGUUcUGGAGGCCGg -3'
miRNA:   3'- aAGAGGCUgu----GCCGGaACUUCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 115842 0.66 0.90707
Target:  5'- aUCUCCu-CGCGGCC--GgcGGCgCGCu -3'
miRNA:   3'- aAGAGGcuGUGCCGGaaCuuCCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 117984 0.68 0.820461
Target:  5'- -aCUCCGu--CGGCCgauucGGCCGCg -3'
miRNA:   3'- aaGAGGCuguGCCGGaacuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 119734 0.67 0.874488
Target:  5'- ---aCCGugACGGCC----GGGUCGCg -3'
miRNA:   3'- aagaGGCugUGCCGGaacuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 120584 0.66 0.918567
Target:  5'- -cCUCCGGCGcCGGUCUc---GGCCGg -3'
miRNA:   3'- aaGAGGCUGU-GCCGGAacuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 121164 0.67 0.894684
Target:  5'- uUUC-CCGAUGC-GCCUcGAAGGCCa- -3'
miRNA:   3'- -AAGaGGCUGUGcCGGAaCUUCCGGcg -5'
15741 3' -57.2 NC_004065.1 + 126735 0.66 0.909441
Target:  5'- -cCUgCCGcCGCGGCCUcGAagaaccugaaguucgAGGCCGg -3'
miRNA:   3'- aaGA-GGCuGUGCCGGAaCU---------------UCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 127787 0.66 0.929164
Target:  5'- -gCUCCGAC-CGGUa-UGucauGGCCGUg -3'
miRNA:   3'- aaGAGGCUGuGCCGgaACuu--CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 128381 0.68 0.844721
Target:  5'- -gCUUCGGCGgcgagagcCGGCUgUGggGGCCGa -3'
miRNA:   3'- aaGAGGCUGU--------GCCGGaACuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 131540 0.69 0.783203
Target:  5'- cUCUCCGgcgagcacauguACACGGCCaUGAucagggcgaccaccAGGUCGUc -3'
miRNA:   3'- aAGAGGC------------UGUGCCGGaACU--------------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 132861 0.7 0.738846
Target:  5'- aUUCuUCCGuaaagaucggcuuGCGCGGCCa-GAGGGUCGCc -3'
miRNA:   3'- -AAG-AGGC-------------UGUGCCGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 139168 0.66 0.90707
Target:  5'- -aUUCCGucuacgaauucaGCACGGCCUccaacuuucucGAAuGGCCGCu -3'
miRNA:   3'- aaGAGGC------------UGUGCCGGAa----------CUU-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 139370 0.72 0.612157
Target:  5'- cUCUCCaccaccgacGACGCGGUCUgauGGGGUCGCg -3'
miRNA:   3'- aAGAGG---------CUGUGCCGGAac-UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 140843 0.89 0.06639
Target:  5'- cUCUCCGACaagaagACGGCCcUGAAGGCCGCc -3'
miRNA:   3'- aAGAGGCUG------UGCCGGaACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 141407 0.69 0.809484
Target:  5'- aUC-CCGAgcugGCGGCCaucgccgagcucaugGAGGGCCGCg -3'
miRNA:   3'- aAGaGGCUg---UGCCGGaa-------------CUUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.