miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 214571 0.69 0.812041
Target:  5'- cUCUCCGuCACGGCUUccaGAuaaaaGCCGCc -3'
miRNA:   3'- aAGAGGCuGUGCCGGAa--CUuc---CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 208936 0.68 0.844721
Target:  5'- cUCUCCgucGugGCGGCCgaacUGuucGGCUGCc -3'
miRNA:   3'- aAGAGG---CugUGCCGGa---ACuu-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 208067 0.7 0.720676
Target:  5'- gUCcugCCGACgACGGCCcu---GGCCGCg -3'
miRNA:   3'- aAGa--GGCUG-UGCCGGaacuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 207975 0.68 0.844721
Target:  5'- ---aCCGACcggagggauaccGCGGCCUgcccGGGGCCGUg -3'
miRNA:   3'- aagaGGCUG------------UGCCGGAac--UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 205265 0.67 0.867341
Target:  5'- ---cCCG-CGcCGGCCaacgGggGGCCGCc -3'
miRNA:   3'- aagaGGCuGU-GCCGGaa--CuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 204103 0.67 0.897231
Target:  5'- cUCUUCGccggcgggaaccugcGCAUGGCCUggcccgccGGGGCCGUg -3'
miRNA:   3'- aAGAGGC---------------UGUGCCGGAac------UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 203121 0.66 0.900987
Target:  5'- --gUCCGGCgugcggucgaGCGGCCUcUGGAccGGCCGg -3'
miRNA:   3'- aagAGGCUG----------UGCCGGA-ACUU--CCGGCg -5'
15741 3' -57.2 NC_004065.1 + 200997 0.68 0.828719
Target:  5'- --gUCgCGACGcCGGUCUgacucGAGGCCGCg -3'
miRNA:   3'- aagAG-GCUGU-GCCGGAac---UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 192722 0.67 0.894684
Target:  5'- ---gCCGACcgGgGGCuCUUG-AGGCCGCc -3'
miRNA:   3'- aagaGGCUG--UgCCG-GAACuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 192557 0.68 0.844721
Target:  5'- cUCguuagugCCGACACGGCUcUGAuacaccGGCUGUc -3'
miRNA:   3'- aAGa------GGCUGUGCCGGaACUu-----CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 191296 0.67 0.886834
Target:  5'- cUCUCUGAgGCGGagcaggauggUGccGGCCGCg -3'
miRNA:   3'- aAGAGGCUgUGCCgga-------ACuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 186126 0.67 0.884149
Target:  5'- cUUCcCCGAauaCAgaagaacccugagggUGGCCgUGGAGGCCGCc -3'
miRNA:   3'- -AAGaGGCU---GU---------------GCCGGaACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 183514 0.67 0.881431
Target:  5'- ---aCCGACAgGGUCUcGAAcGGCuCGCg -3'
miRNA:   3'- aagaGGCUGUgCCGGAaCUU-CCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 182613 0.69 0.794746
Target:  5'- --gUCCGAUGCGcuucaguaGCCggGAAGGUCGCu -3'
miRNA:   3'- aagAGGCUGUGC--------CGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 182167 0.71 0.681647
Target:  5'- cUUCUCCcacuacGACGCcGCCaacaucaUGAGGGCCGCu -3'
miRNA:   3'- -AAGAGG------CUGUGcCGGa------ACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 169592 0.7 0.730275
Target:  5'- -gCUCCGGC-CGGUUcgcGggGGCCGUc -3'
miRNA:   3'- aaGAGGCUGuGCCGGaa-CuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 169489 0.66 0.912931
Target:  5'- gUCUCCG--GCGGCUUcGucGGCUGUa -3'
miRNA:   3'- aAGAGGCugUGCCGGAaCuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 169223 0.68 0.842366
Target:  5'- -gCUCCGGCGacaagaugUGGCUcauguucgcgaggcgGGAGGCCGCg -3'
miRNA:   3'- aaGAGGCUGU--------GCCGGaa-------------CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 165868 0.66 0.90707
Target:  5'- gUCUCU--CACGGUCccGAaggcgAGGCCGCa -3'
miRNA:   3'- aAGAGGcuGUGCCGGaaCU-----UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 165147 0.74 0.533667
Target:  5'- cUUCUCCGACGCGcGCCgc---GGuCCGCa -3'
miRNA:   3'- -AAGAGGCUGUGC-CGGaacuuCC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.