miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 162755 0.72 0.602229
Target:  5'- gUCUCCG-C-CGuGCCgUUGAAcGGCCGCg -3'
miRNA:   3'- aAGAGGCuGuGC-CGG-AACUU-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 162506 0.68 0.828719
Target:  5'- gUCUCCGAuCAUGGCCccGAAGaacgacagcGCCGa -3'
miRNA:   3'- aAGAGGCU-GUGCCGGaaCUUC---------CGGCg -5'
15741 3' -57.2 NC_004065.1 + 161244 1.08 0.003693
Target:  5'- gUUCUCCGACACGGCCUUGAAGGCCGCc -3'
miRNA:   3'- -AAGAGGCUGUGCCGGAACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 160984 0.69 0.785886
Target:  5'- aUCUCCGGCgGCGGC-----GGGCUGCu -3'
miRNA:   3'- aAGAGGCUG-UGCCGgaacuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 159712 0.71 0.698341
Target:  5'- gUUC-CUGuACGCGGCCgUguggggggugcugcUGAAGGCCGCc -3'
miRNA:   3'- -AAGaGGC-UGUGCCGG-A--------------ACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 152359 0.66 0.929164
Target:  5'- aUCUCCGACugcCGcGUCUUGAGcGCCu- -3'
miRNA:   3'- aAGAGGCUGu--GC-CGGAACUUcCGGcg -5'
15741 3' -57.2 NC_004065.1 + 151510 0.72 0.632049
Target:  5'- gUCUCCGACAucgccaucCGcGCCcUGGacggcggcaaGGGCCGCa -3'
miRNA:   3'- aAGAGGCUGU--------GC-CGGaACU----------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 150012 0.67 0.888164
Target:  5'- gUCaUCCGACgucugGCGGCUcgGAAGGaggaacugcCCGCg -3'
miRNA:   3'- aAG-AGGCUG-----UGCCGGaaCUUCC---------GGCG- -5'
15741 3' -57.2 NC_004065.1 + 149813 0.67 0.894684
Target:  5'- aUCUCCucGACAUGGUCUUGGAucuGGUCc- -3'
miRNA:   3'- aAGAGG--CUGUGCCGGAACUU---CCGGcg -5'
15741 3' -57.2 NC_004065.1 + 143623 0.68 0.844721
Target:  5'- cUCUcCCGACAgCGGUCUauaacUGA-GGCCGa -3'
miRNA:   3'- aAGA-GGCUGU-GCCGGA-----ACUuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 143293 0.69 0.794746
Target:  5'- ---gCCGAgGCGGCgUcGggGGCCGg -3'
miRNA:   3'- aagaGGCUgUGCCGgAaCuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 142759 0.66 0.918567
Target:  5'- cUCUCCcgcgacGACgACGGCCUgcUGguGGUgGCg -3'
miRNA:   3'- aAGAGG------CUG-UGCCGGA--ACuuCCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 141407 0.69 0.809484
Target:  5'- aUC-CCGAgcugGCGGCCaucgccgagcucaugGAGGGCCGCg -3'
miRNA:   3'- aAGaGGCUg---UGCCGGaa-------------CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 140843 0.89 0.06639
Target:  5'- cUCUCCGACaagaagACGGCCcUGAAGGCCGCc -3'
miRNA:   3'- aAGAGGCUG------UGCCGGaACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 139370 0.72 0.612157
Target:  5'- cUCUCCaccaccgacGACGCGGUCUgauGGGGUCGCg -3'
miRNA:   3'- aAGAGG---------CUGUGCCGGAac-UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 139168 0.66 0.90707
Target:  5'- -aUUCCGucuacgaauucaGCACGGCCUccaacuuucucGAAuGGCCGCu -3'
miRNA:   3'- aaGAGGC------------UGUGCCGGAa----------CUU-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 132861 0.7 0.738846
Target:  5'- aUUCuUCCGuaaagaucggcuuGCGCGGCCa-GAGGGUCGCc -3'
miRNA:   3'- -AAG-AGGC-------------UGUGCCGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 131540 0.69 0.783203
Target:  5'- cUCUCCGgcgagcacauguACACGGCCaUGAucagggcgaccaccAGGUCGUc -3'
miRNA:   3'- aAGAGGC------------UGUGCCGGaACU--------------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 128381 0.68 0.844721
Target:  5'- -gCUUCGGCGgcgagagcCGGCUgUGggGGCCGa -3'
miRNA:   3'- aaGAGGCUGU--------GCCGGaACuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 127787 0.66 0.929164
Target:  5'- -gCUCCGAC-CGGUa-UGucauGGCCGUg -3'
miRNA:   3'- aaGAGGCUGuGCCGgaACuu--CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.