miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 126735 0.66 0.909441
Target:  5'- -cCUgCCGcCGCGGCCUcGAagaaccugaaguucgAGGCCGg -3'
miRNA:   3'- aaGA-GGCuGUGCCGGAaCU---------------UCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 121164 0.67 0.894684
Target:  5'- uUUC-CCGAUGC-GCCUcGAAGGCCa- -3'
miRNA:   3'- -AAGaGGCUGUGcCGGAaCUUCCGGcg -5'
15741 3' -57.2 NC_004065.1 + 120584 0.66 0.918567
Target:  5'- -cCUCCGGCGcCGGUCUc---GGCCGg -3'
miRNA:   3'- aaGAGGCUGU-GCCGGAacuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 119734 0.67 0.874488
Target:  5'- ---aCCGugACGGCC----GGGUCGCg -3'
miRNA:   3'- aagaGGCugUGCCGGaacuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 117984 0.68 0.820461
Target:  5'- -aCUCCGu--CGGCCgauucGGCCGCg -3'
miRNA:   3'- aaGAGGCuguGCCGGaacuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 115842 0.66 0.90707
Target:  5'- aUCUCCu-CGCGGCC--GgcGGCgCGCu -3'
miRNA:   3'- aAGAGGcuGUGCCGGaaCuuCCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 115056 0.72 0.632049
Target:  5'- cUCUCCGAacucauCGGUUcUGGAGGCCGg -3'
miRNA:   3'- aAGAGGCUgu----GCCGGaACUUCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 115036 0.69 0.776896
Target:  5'- --aUCCG-CGCGGCCgccAGGGCCGa -3'
miRNA:   3'- aagAGGCuGUGCCGGaacUUCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 113933 0.68 0.844721
Target:  5'- gUCgaCGACGCGGCgCUcGggGGCUGg -3'
miRNA:   3'- aAGagGCUGUGCCG-GAaCuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 113746 0.66 0.918567
Target:  5'- -aCUCCGGCGaggaGGCCgagGGAcagcgcGGCgGCa -3'
miRNA:   3'- aaGAGGCUGUg---CCGGaa-CUU------CCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 111046 0.66 0.918567
Target:  5'- --gUCUGGCACcGCCguaacGGAGGCgCGCg -3'
miRNA:   3'- aagAGGCUGUGcCGGaa---CUUCCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 109961 0.68 0.852452
Target:  5'- cUCUCCGGCGCGGUCUccgacgacguccUGgcGcucuggacGCUGCg -3'
miRNA:   3'- aAGAGGCUGUGCCGGA------------ACuuC--------CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 99967 0.66 0.912931
Target:  5'- ---aCCGcCGCGGCgUgcucGGGCCGCg -3'
miRNA:   3'- aagaGGCuGUGCCGgAacu-UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 99097 0.7 0.729319
Target:  5'- gUCUCgGGCGCGGCCguauaaaccccguUUGAcGGCaaCGCa -3'
miRNA:   3'- aAGAGgCUGUGCCGG-------------AACUuCCG--GCG- -5'
15741 3' -57.2 NC_004065.1 + 95194 0.68 0.844721
Target:  5'- gUCUCCGGgGgaGGCCgaGAGGuGCCuGCa -3'
miRNA:   3'- aAGAGGCUgUg-CCGGaaCUUC-CGG-CG- -5'
15741 3' -57.2 NC_004065.1 + 92062 0.71 0.671773
Target:  5'- aUCUC--ACGCGcGCUcgGAGGGCCGCg -3'
miRNA:   3'- aAGAGgcUGUGC-CGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 90823 0.69 0.794746
Target:  5'- gUUCU-UGACgaGCGGCCauucgagaaagUUGGAGGCCGUg -3'
miRNA:   3'- -AAGAgGCUG--UGCCGG-----------AACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 89762 0.68 0.844721
Target:  5'- ----aCGACGCGGCgUUGAugaGGGCCa- -3'
miRNA:   3'- aagagGCUGUGCCGgAACU---UCCGGcg -5'
15741 3' -57.2 NC_004065.1 + 89165 0.73 0.582442
Target:  5'- cUCgCUGGCgGCGGCCUUcAGGGCCGUc -3'
miRNA:   3'- aAGaGGCUG-UGCCGGAAcUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 88216 0.74 0.505099
Target:  5'- gUCUCCGACGCGGCUaacAGGaGCCGg -3'
miRNA:   3'- aAGAGGCUGUGCCGGaacUUC-CGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.