miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 200997 0.68 0.828719
Target:  5'- --gUCgCGACGcCGGUCUgacucGAGGCCGCg -3'
miRNA:   3'- aagAG-GCUGU-GCCGGAac---UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 115036 0.69 0.776896
Target:  5'- --aUCCG-CGCGGCCgccAGGGCCGa -3'
miRNA:   3'- aagAGGCuGUGCCGGaacUUCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 131540 0.69 0.783203
Target:  5'- cUCUCCGgcgagcacauguACACGGCCaUGAucagggcgaccaccAGGUCGUc -3'
miRNA:   3'- aAGAGGC------------UGUGCCGGaACU--------------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 62470 0.69 0.785886
Target:  5'- ---aCCGGCgACGGCag-GAGcGGCCGCg -3'
miRNA:   3'- aagaGGCUG-UGCCGgaaCUU-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 75667 0.69 0.794746
Target:  5'- gUCggCGAgGCGGCCgcgggcUGAuucuuGGCCGCg -3'
miRNA:   3'- aAGagGCUgUGCCGGa-----ACUu----CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 90823 0.69 0.794746
Target:  5'- gUUCU-UGACgaGCGGCCauucgagaaagUUGGAGGCCGUg -3'
miRNA:   3'- -AAGAgGCUG--UGCCGG-----------AACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 182613 0.69 0.794746
Target:  5'- --gUCCGAUGCGcuucaguaGCCggGAAGGUCGCu -3'
miRNA:   3'- aagAGGCUGUGC--------CGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 214571 0.69 0.812041
Target:  5'- cUCUCCGuCACGGCUUccaGAuaaaaGCCGCc -3'
miRNA:   3'- aAGAGGCuGUGCCGGAa--CUuc---CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 117984 0.68 0.820461
Target:  5'- -aCUCCGu--CGGCCgauucGGCCGCg -3'
miRNA:   3'- aaGAGGCuguGCCGGaacuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 36105 0.69 0.776896
Target:  5'- ---aCCGugGCGGCaac-GGGGCCGCu -3'
miRNA:   3'- aagaGGCugUGCCGgaacUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 132861 0.7 0.738846
Target:  5'- aUUCuUCCGuaaagaucggcuuGCGCGGCCa-GAGGGUCGCc -3'
miRNA:   3'- -AAG-AGGC-------------UGUGCCGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 169592 0.7 0.730275
Target:  5'- -gCUCCGGC-CGGUUcgcGggGGCCGUc -3'
miRNA:   3'- aaGAGGCUGuGCCGGaa-CuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 68757 0.73 0.58639
Target:  5'- -aCUCgGACaucgcggcggugcugGCGGCCUUcAAGGCCGUg -3'
miRNA:   3'- aaGAGgCUG---------------UGCCGGAAcUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 20649 0.72 0.602229
Target:  5'- gUCUCCGuCGCaGGCCUcGGAGuaCGCg -3'
miRNA:   3'- aAGAGGCuGUG-CCGGAaCUUCcgGCG- -5'
15741 3' -57.2 NC_004065.1 + 22031 0.72 0.612157
Target:  5'- ---cCCGGcCACGGCCccgGGcAGGCCGCg -3'
miRNA:   3'- aagaGGCU-GUGCCGGaa-CU-UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 139370 0.72 0.612157
Target:  5'- cUCUCCaccaccgacGACGCGGUCUgauGGGGUCGCg -3'
miRNA:   3'- aAGAGG---------CUGUGCCGGAac-UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 151510 0.72 0.632049
Target:  5'- gUCUCCGACAucgccaucCGcGCCcUGGacggcggcaaGGGCCGCa -3'
miRNA:   3'- aAGAGGCUGU--------GC-CGGaACU----------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 92062 0.71 0.671773
Target:  5'- aUCUC--ACGCGcGCUcgGAGGGCCGCg -3'
miRNA:   3'- aAGAGgcUGUGC-CGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 46877 0.71 0.700296
Target:  5'- aUCcuggCCGugacggcgaggauGCACGGCUggaGggGGCCGCg -3'
miRNA:   3'- aAGa---GGC-------------UGUGCCGGaa-CuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 99097 0.7 0.729319
Target:  5'- gUCUCgGGCGCGGCCguauaaaccccguUUGAcGGCaaCGCa -3'
miRNA:   3'- aAGAGgCUGUGCCGG-------------AACUuCCG--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.