Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15741 | 3' | -57.2 | NC_004065.1 | + | 200997 | 0.68 | 0.828719 |
Target: 5'- --gUCgCGACGcCGGUCUgacucGAGGCCGCg -3' miRNA: 3'- aagAG-GCUGU-GCCGGAac---UUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 117984 | 0.68 | 0.820461 |
Target: 5'- -aCUCCGu--CGGCCgauucGGCCGCg -3' miRNA: 3'- aaGAGGCuguGCCGGaacuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 99097 | 0.7 | 0.729319 |
Target: 5'- gUCUCgGGCGCGGCCguauaaaccccguUUGAcGGCaaCGCa -3' miRNA: 3'- aAGAGgCUGUGCCGG-------------AACUuCCG--GCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 46877 | 0.71 | 0.700296 |
Target: 5'- aUCcuggCCGugacggcgaggauGCACGGCUggaGggGGCCGCg -3' miRNA: 3'- aAGa---GGC-------------UGUGCCGGaa-CuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 92062 | 0.71 | 0.671773 |
Target: 5'- aUCUC--ACGCGcGCUcgGAGGGCCGCg -3' miRNA: 3'- aAGAGgcUGUGC-CGGaaCUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 151510 | 0.72 | 0.632049 |
Target: 5'- gUCUCCGACAucgccaucCGcGCCcUGGacggcggcaaGGGCCGCa -3' miRNA: 3'- aAGAGGCUGU--------GC-CGGaACU----------UCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 139370 | 0.72 | 0.612157 |
Target: 5'- cUCUCCaccaccgacGACGCGGUCUgauGGGGUCGCg -3' miRNA: 3'- aAGAGG---------CUGUGCCGGAac-UUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 22031 | 0.72 | 0.612157 |
Target: 5'- ---cCCGGcCACGGCCccgGGcAGGCCGCg -3' miRNA: 3'- aagaGGCU-GUGCCGGaa-CU-UCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 20649 | 0.72 | 0.602229 |
Target: 5'- gUCUCCGuCGCaGGCCUcGGAGuaCGCg -3' miRNA: 3'- aAGAGGCuGUG-CCGGAaCUUCcgGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 68757 | 0.73 | 0.58639 |
Target: 5'- -aCUCgGACaucgcggcggugcugGCGGCCUUcAAGGCCGUg -3' miRNA: 3'- aaGAGgCUG---------------UGCCGGAAcUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 169592 | 0.7 | 0.730275 |
Target: 5'- -gCUCCGGC-CGGUUcgcGggGGCCGUc -3' miRNA: 3'- aaGAGGCUGuGCCGGaa-CuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 132861 | 0.7 | 0.738846 |
Target: 5'- aUUCuUCCGuaaagaucggcuuGCGCGGCCa-GAGGGUCGCc -3' miRNA: 3'- -AAG-AGGC-------------UGUGCCGGaaCUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 214571 | 0.69 | 0.812041 |
Target: 5'- cUCUCCGuCACGGCUUccaGAuaaaaGCCGCc -3' miRNA: 3'- aAGAGGCuGUGCCGGAa--CUuc---CGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 182613 | 0.69 | 0.794746 |
Target: 5'- --gUCCGAUGCGcuucaguaGCCggGAAGGUCGCu -3' miRNA: 3'- aagAGGCUGUGC--------CGGaaCUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 90823 | 0.69 | 0.794746 |
Target: 5'- gUUCU-UGACgaGCGGCCauucgagaaagUUGGAGGCCGUg -3' miRNA: 3'- -AAGAgGCUG--UGCCGG-----------AACUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 75667 | 0.69 | 0.794746 |
Target: 5'- gUCggCGAgGCGGCCgcgggcUGAuucuuGGCCGCg -3' miRNA: 3'- aAGagGCUgUGCCGGa-----ACUu----CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 62470 | 0.69 | 0.785886 |
Target: 5'- ---aCCGGCgACGGCag-GAGcGGCCGCg -3' miRNA: 3'- aagaGGCUG-UGCCGgaaCUU-CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 131540 | 0.69 | 0.783203 |
Target: 5'- cUCUCCGgcgagcacauguACACGGCCaUGAucagggcgaccaccAGGUCGUc -3' miRNA: 3'- aAGAGGC------------UGUGCCGGaACU--------------UCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 115036 | 0.69 | 0.776896 |
Target: 5'- --aUCCG-CGCGGCCgccAGGGCCGa -3' miRNA: 3'- aagAGGCuGUGCCGGaacUUCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 36105 | 0.69 | 0.776896 |
Target: 5'- ---aCCGugGCGGCaac-GGGGCCGCu -3' miRNA: 3'- aagaGGCugUGCCGgaacUUCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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