Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15741 | 3' | -57.2 | NC_004065.1 | + | 200997 | 0.68 | 0.828719 |
Target: 5'- --gUCgCGACGcCGGUCUgacucGAGGCCGCg -3' miRNA: 3'- aagAG-GCUGU-GCCGGAac---UUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 117984 | 0.68 | 0.820461 |
Target: 5'- -aCUCCGu--CGGCCgauucGGCCGCg -3' miRNA: 3'- aaGAGGCuguGCCGGaacuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 214571 | 0.69 | 0.812041 |
Target: 5'- cUCUCCGuCACGGCUUccaGAuaaaaGCCGCc -3' miRNA: 3'- aAGAGGCuGUGCCGGAa--CUuc---CGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 182613 | 0.69 | 0.794746 |
Target: 5'- --gUCCGAUGCGcuucaguaGCCggGAAGGUCGCu -3' miRNA: 3'- aagAGGCUGUGC--------CGGaaCUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 90823 | 0.69 | 0.794746 |
Target: 5'- gUUCU-UGACgaGCGGCCauucgagaaagUUGGAGGCCGUg -3' miRNA: 3'- -AAGAgGCUG--UGCCGG-----------AACUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 75667 | 0.69 | 0.794746 |
Target: 5'- gUCggCGAgGCGGCCgcgggcUGAuucuuGGCCGCg -3' miRNA: 3'- aAGagGCUgUGCCGGa-----ACUu----CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 62470 | 0.69 | 0.785886 |
Target: 5'- ---aCCGGCgACGGCag-GAGcGGCCGCg -3' miRNA: 3'- aagaGGCUG-UGCCGgaaCUU-CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 131540 | 0.69 | 0.783203 |
Target: 5'- cUCUCCGgcgagcacauguACACGGCCaUGAucagggcgaccaccAGGUCGUc -3' miRNA: 3'- aAGAGGC------------UGUGCCGGaACU--------------UCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 115056 | 0.72 | 0.632049 |
Target: 5'- cUCUCCGAacucauCGGUUcUGGAGGCCGg -3' miRNA: 3'- aAGAGGCUgu----GCCGGaACUUCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 182167 | 0.71 | 0.681647 |
Target: 5'- cUUCUCCcacuacGACGCcGCCaacaucaUGAGGGCCGCu -3' miRNA: 3'- -AAGAGG------CUGUGcCGGa------ACUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 11561 | 0.71 | 0.681647 |
Target: 5'- uUUUUCCGuguggaucaacaACACGGCCaUGAcuaguuuauGGCCGCa -3' miRNA: 3'- -AAGAGGC------------UGUGCCGGaACUu--------CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 159712 | 0.71 | 0.698341 |
Target: 5'- gUUC-CUGuACGCGGCCgUguggggggugcugcUGAAGGCCGCc -3' miRNA: 3'- -AAGaGGC-UGUGCCGG-A--------------ACUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 208067 | 0.7 | 0.720676 |
Target: 5'- gUCcugCCGACgACGGCCcu---GGCCGCg -3' miRNA: 3'- aAGa--GGCUG-UGCCGGaacuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 77600 | 0.72 | 0.612157 |
Target: 5'- ---cCCGACGacgcaGGCCUUGGuuuuGGCCGUg -3' miRNA: 3'- aagaGGCUGUg----CCGGAACUu---CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 162755 | 0.72 | 0.602229 |
Target: 5'- gUCUCCG-C-CGuGCCgUUGAAcGGCCGCg -3' miRNA: 3'- aAGAGGCuGuGC-CGG-AACUU-CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 89165 | 0.73 | 0.582442 |
Target: 5'- cUCgCUGGCgGCGGCCUUcAGGGCCGUc -3' miRNA: 3'- aAGaGGCUG-UGCCGGAAcUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 28990 | 0.73 | 0.572596 |
Target: 5'- gUCUCCGGCgGCGGUggcGAGGcGCCGCg -3' miRNA: 3'- aAGAGGCUG-UGCCGgaaCUUC-CGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 165147 | 0.74 | 0.533667 |
Target: 5'- cUUCUCCGACGCGcGCCgc---GGuCCGCa -3' miRNA: 3'- -AAGAGGCUGUGC-CGGaacuuCC-GGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 88216 | 0.74 | 0.505099 |
Target: 5'- gUCUCCGACGCGGCUaacAGGaGCCGg -3' miRNA: 3'- aAGAGGCUGUGCCGGaacUUC-CGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 152359 | 0.66 | 0.929164 |
Target: 5'- aUCUCCGACugcCGcGUCUUGAGcGCCu- -3' miRNA: 3'- aAGAGGCUGu--GC-CGGAACUUcCGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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