Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15741 | 3' | -57.2 | NC_004065.1 | + | 161244 | 1.08 | 0.003693 |
Target: 5'- gUUCUCCGACACGGCCUUGAAGGCCGCc -3' miRNA: 3'- -AAGAGGCUGUGCCGGAACUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 141407 | 0.69 | 0.809484 |
Target: 5'- aUC-CCGAgcugGCGGCCaucgccgagcucaugGAGGGCCGCg -3' miRNA: 3'- aAGaGGCUg---UGCCGGaa-------------CUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 68525 | 0.68 | 0.836808 |
Target: 5'- aUCUcCCGGa--GGCCgaGGAGGCgGCg -3' miRNA: 3'- aAGA-GGCUgugCCGGaaCUUCCGgCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 152359 | 0.66 | 0.929164 |
Target: 5'- aUCUCCGACugcCGcGUCUUGAGcGCCu- -3' miRNA: 3'- aAGAGGCUGu--GC-CGGAACUUcCGGcg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 89165 | 0.73 | 0.582442 |
Target: 5'- cUCgCUGGCgGCGGCCUUcAGGGCCGUc -3' miRNA: 3'- aAGaGGCUG-UGCCGGAAcUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 162755 | 0.72 | 0.602229 |
Target: 5'- gUCUCCG-C-CGuGCCgUUGAAcGGCCGCg -3' miRNA: 3'- aAGAGGCuGuGC-CGG-AACUU-CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 115056 | 0.72 | 0.632049 |
Target: 5'- cUCUCCGAacucauCGGUUcUGGAGGCCGg -3' miRNA: 3'- aAGAGGCUgu----GCCGGaACUUCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 182167 | 0.71 | 0.681647 |
Target: 5'- cUUCUCCcacuacGACGCcGCCaacaucaUGAGGGCCGCu -3' miRNA: 3'- -AAGAGG------CUGUGcCGGa------ACUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 208067 | 0.7 | 0.720676 |
Target: 5'- gUCcugCCGACgACGGCCcu---GGCCGCg -3' miRNA: 3'- aAGa--GGCUG-UGCCGGaacuuCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 143293 | 0.69 | 0.794746 |
Target: 5'- ---gCCGAgGCGGCgUcGggGGCCGg -3' miRNA: 3'- aagaGGCUgUGCCGgAaCuuCCGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 61042 | 0.7 | 0.739794 |
Target: 5'- cUCUCgGACACGcucGCCgUGAGGGCaCGa -3' miRNA: 3'- aAGAGgCUGUGC---CGGaACUUCCG-GCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 159712 | 0.71 | 0.698341 |
Target: 5'- gUUC-CUGuACGCGGCCgUguggggggugcugcUGAAGGCCGCc -3' miRNA: 3'- -AAGaGGC-UGUGCCGG-A--------------ACUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 88216 | 0.74 | 0.505099 |
Target: 5'- gUCUCCGACGCGGCUaacAGGaGCCGg -3' miRNA: 3'- aAGAGGCUGUGCCGGaacUUC-CGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 34651 | 0.69 | 0.776896 |
Target: 5'- cUCggCCGuCACGGUgUccagGAAGGCCGUc -3' miRNA: 3'- aAGa-GGCuGUGCCGgAa---CUUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 165147 | 0.74 | 0.533667 |
Target: 5'- cUUCUCCGACGCGcGCCgc---GGuCCGCa -3' miRNA: 3'- -AAGAGGCUGUGC-CGGaacuuCC-GGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 11561 | 0.71 | 0.681647 |
Target: 5'- uUUUUCCGuguggaucaacaACACGGCCaUGAcuaguuuauGGCCGCa -3' miRNA: 3'- -AAGAGGC------------UGUGCCGGaACUu--------CCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 160984 | 0.69 | 0.785886 |
Target: 5'- aUCUCCGGCgGCGGC-----GGGCUGCu -3' miRNA: 3'- aAGAGGCUG-UGCCGgaacuUCCGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 162506 | 0.68 | 0.828719 |
Target: 5'- gUCUCCGAuCAUGGCCccGAAGaacgacagcGCCGa -3' miRNA: 3'- aAGAGGCU-GUGCCGGaaCUUC---------CGGCg -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 28990 | 0.73 | 0.572596 |
Target: 5'- gUCUCCGGCgGCGGUggcGAGGcGCCGCg -3' miRNA: 3'- aAGAGGCUG-UGCCGgaaCUUC-CGGCG- -5' |
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15741 | 3' | -57.2 | NC_004065.1 | + | 77600 | 0.72 | 0.612157 |
Target: 5'- ---cCCGACGacgcaGGCCUUGGuuuuGGCCGUg -3' miRNA: 3'- aagaGGCUGUg----CCGGAACUu---CCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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