miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 143623 0.68 0.844721
Target:  5'- cUCUcCCGACAgCGGUCUauaacUGA-GGCCGa -3'
miRNA:   3'- aAGA-GGCUGU-GCCGGA-----ACUuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 68525 0.68 0.836808
Target:  5'- aUCUcCCGGa--GGCCgaGGAGGCgGCg -3'
miRNA:   3'- aAGA-GGCUgugCCGGaaCUUCCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 159712 0.71 0.698341
Target:  5'- gUUC-CUGuACGCGGCCgUguggggggugcugcUGAAGGCCGCc -3'
miRNA:   3'- -AAGaGGC-UGUGCCGG-A--------------ACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 28990 0.73 0.572596
Target:  5'- gUCUCCGGCgGCGGUggcGAGGcGCCGCg -3'
miRNA:   3'- aAGAGGCUG-UGCCGgaaCUUC-CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 204103 0.67 0.897231
Target:  5'- cUCUUCGccggcgggaaccugcGCAUGGCCUggcccgccGGGGCCGUg -3'
miRNA:   3'- aAGAGGC---------------UGUGCCGGAac------UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 57651 0.67 0.873075
Target:  5'- aUCUCCGcCACGGgUUcguucuggggagagaUGAuccacugucaggugaGGGCCGCg -3'
miRNA:   3'- aAGAGGCuGUGCCgGA---------------ACU---------------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 141407 0.69 0.809484
Target:  5'- aUC-CCGAgcugGCGGCCaucgccgagcucaugGAGGGCCGCg -3'
miRNA:   3'- aAGaGGCUg---UGCCGGaa-------------CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 165147 0.74 0.533667
Target:  5'- cUUCUCCGACGCGcGCCgc---GGuCCGCa -3'
miRNA:   3'- -AAGAGGCUGUGC-CGGaacuuCC-GGCG- -5'
15741 3' -57.2 NC_004065.1 + 205265 0.67 0.867341
Target:  5'- ---cCCG-CGcCGGCCaacgGggGGCCGCc -3'
miRNA:   3'- aagaGGCuGU-GCCGGaa--CuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 88216 0.74 0.505099
Target:  5'- gUCUCCGACGCGGCUaacAGGaGCCGg -3'
miRNA:   3'- aAGAGGCUGUGCCGGaacUUC-CGGCg -5'
15741 3' -57.2 NC_004065.1 + 162506 0.68 0.828719
Target:  5'- gUCUCCGAuCAUGGCCccGAAGaacgacagcGCCGa -3'
miRNA:   3'- aAGAGGCU-GUGCCGGaaCUUC---------CGGCg -5'
15741 3' -57.2 NC_004065.1 + 207975 0.68 0.844721
Target:  5'- ---aCCGACcggagggauaccGCGGCCUgcccGGGGCCGUg -3'
miRNA:   3'- aagaGGCUG------------UGCCGGAac--UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 34651 0.69 0.776896
Target:  5'- cUCggCCGuCACGGUgUccagGAAGGCCGUc -3'
miRNA:   3'- aAGa-GGCuGUGCCGgAa---CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 208067 0.7 0.720676
Target:  5'- gUCcugCCGACgACGGCCcu---GGCCGCg -3'
miRNA:   3'- aAGa--GGCUG-UGCCGGaacuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 115056 0.72 0.632049
Target:  5'- cUCUCCGAacucauCGGUUcUGGAGGCCGg -3'
miRNA:   3'- aAGAGGCUgu----GCCGGaACUUCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 89165 0.73 0.582442
Target:  5'- cUCgCUGGCgGCGGCCUUcAGGGCCGUc -3'
miRNA:   3'- aAGaGGCUG-UGCCGGAAcUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 139168 0.66 0.90707
Target:  5'- -aUUCCGucuacgaauucaGCACGGCCUccaacuuucucGAAuGGCCGCu -3'
miRNA:   3'- aaGAGGC------------UGUGCCGGAa----------CUU-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 203121 0.66 0.900987
Target:  5'- --gUCCGGCgugcggucgaGCGGCCUcUGGAccGGCCGg -3'
miRNA:   3'- aagAGGCUG----------UGCCGGA-ACUU--CCGGCg -5'
15741 3' -57.2 NC_004065.1 + 6209 0.67 0.894684
Target:  5'- -cCUCCGACAgGGUCgUGuucuaucuGCCGCa -3'
miRNA:   3'- aaGAGGCUGUgCCGGaACuuc-----CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 119734 0.67 0.874488
Target:  5'- ---aCCGugACGGCC----GGGUCGCg -3'
miRNA:   3'- aagaGGCugUGCCGGaacuUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.