miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 150012 0.67 0.888164
Target:  5'- gUCaUCCGACgucugGCGGCUcgGAAGGaggaacugcCCGCg -3'
miRNA:   3'- aAG-AGGCUG-----UGCCGGaaCUUCC---------GGCG- -5'
15741 3' -57.2 NC_004065.1 + 160984 0.69 0.785886
Target:  5'- aUCUCCGGCgGCGGC-----GGGCUGCu -3'
miRNA:   3'- aAGAGGCUG-UGCCGgaacuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 61042 0.7 0.739794
Target:  5'- cUCUCgGACACGcucGCCgUGAGGGCaCGa -3'
miRNA:   3'- aAGAGgCUGUGC---CGGaACUUCCG-GCg -5'
15741 3' -57.2 NC_004065.1 + 34651 0.69 0.776896
Target:  5'- cUCggCCGuCACGGUgUccagGAAGGCCGUc -3'
miRNA:   3'- aAGa-GGCuGUGCCGgAa---CUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 151510 0.72 0.632049
Target:  5'- gUCUCCGACAucgccaucCGcGCCcUGGacggcggcaaGGGCCGCa -3'
miRNA:   3'- aAGAGGCUGU--------GC-CGGaACU----------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 20649 0.72 0.602229
Target:  5'- gUCUCCGuCGCaGGCCUcGGAGuaCGCg -3'
miRNA:   3'- aAGAGGCuGUG-CCGGAaCUUCcgGCG- -5'
15741 3' -57.2 NC_004065.1 + 92062 0.71 0.671773
Target:  5'- aUCUC--ACGCGcGCUcgGAGGGCCGCg -3'
miRNA:   3'- aAGAGgcUGUGC-CGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 86741 0.67 0.894684
Target:  5'- ---cCCGACGCcgccucGGcCCUUGAAGcuGCCGCc -3'
miRNA:   3'- aagaGGCUGUG------CC-GGAACUUC--CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 186126 0.67 0.884149
Target:  5'- cUUCcCCGAauaCAgaagaacccugagggUGGCCgUGGAGGCCGCc -3'
miRNA:   3'- -AAGaGGCU---GU---------------GCCGGaACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 46167 0.66 0.929671
Target:  5'- --gUUCGGcCACGGCCaaacacgcgacggcgUGggGGCCGa -3'
miRNA:   3'- aagAGGCU-GUGCCGGa--------------ACuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 191296 0.67 0.886834
Target:  5'- cUCUCUGAgGCGGagcaggauggUGccGGCCGCg -3'
miRNA:   3'- aAGAGGCUgUGCCgga-------ACuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 31081 0.67 0.888164
Target:  5'- -cCUCaUGGCgGCGGCCUU---GGCCGCc -3'
miRNA:   3'- aaGAG-GCUG-UGCCGGAAcuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 109961 0.68 0.852452
Target:  5'- cUCUCCGGCGCGGUCUccgacgacguccUGgcGcucuggacGCUGCg -3'
miRNA:   3'- aAGAGGCUGUGCCGGA------------ACuuC--------CGGCG- -5'
15741 3' -57.2 NC_004065.1 + 89762 0.68 0.844721
Target:  5'- ----aCGACGCGGCgUUGAugaGGGCCa- -3'
miRNA:   3'- aagagGCUGUGCCGgAACU---UCCGGcg -5'
15741 3' -57.2 NC_004065.1 + 208936 0.68 0.844721
Target:  5'- cUCUCCgucGugGCGGCCgaacUGuucGGCUGCc -3'
miRNA:   3'- aAGAGG---CugUGCCGGa---ACuu-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 192557 0.68 0.844721
Target:  5'- cUCguuagugCCGACACGGCUcUGAuacaccGGCUGUc -3'
miRNA:   3'- aAGa------GGCUGUGCCGGaACUu-----CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 62470 0.69 0.785886
Target:  5'- ---aCCGGCgACGGCag-GAGcGGCCGCg -3'
miRNA:   3'- aagaGGCUG-UGCCGgaaCUU-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 131540 0.69 0.783203
Target:  5'- cUCUCCGgcgagcacauguACACGGCCaUGAucagggcgaccaccAGGUCGUc -3'
miRNA:   3'- aAGAGGC------------UGUGCCGGaACU--------------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 115036 0.69 0.776896
Target:  5'- --aUCCG-CGCGGCCgccAGGGCCGa -3'
miRNA:   3'- aagAGGCuGUGCCGGaacUUCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 36105 0.69 0.776896
Target:  5'- ---aCCGugGCGGCaac-GGGGCCGCu -3'
miRNA:   3'- aagaGGCugUGCCGgaacUUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.