miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 3' -57.2 NC_004065.1 + 92062 0.71 0.671773
Target:  5'- aUCUC--ACGCGcGCUcgGAGGGCCGCg -3'
miRNA:   3'- aAGAGgcUGUGC-CGGaaCUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 151510 0.72 0.632049
Target:  5'- gUCUCCGACAucgccaucCGcGCCcUGGacggcggcaaGGGCCGCa -3'
miRNA:   3'- aAGAGGCUGU--------GC-CGGaACU----------UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 139370 0.72 0.612157
Target:  5'- cUCUCCaccaccgacGACGCGGUCUgauGGGGUCGCg -3'
miRNA:   3'- aAGAGG---------CUGUGCCGGAac-UUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 208936 0.68 0.844721
Target:  5'- cUCUCCgucGugGCGGCCgaacUGuucGGCUGCc -3'
miRNA:   3'- aAGAGG---CugUGCCGGa---ACuu-CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 89762 0.68 0.844721
Target:  5'- ----aCGACGCGGCgUUGAugaGGGCCa- -3'
miRNA:   3'- aagagGCUGUGCCGgAACU---UCCGGcg -5'
15741 3' -57.2 NC_004065.1 + 24114 0.66 0.929164
Target:  5'- ---gCCGACGuCGGCCUcGgcGGCC-Ca -3'
miRNA:   3'- aagaGGCUGU-GCCGGAaCuuCCGGcG- -5'
15741 3' -57.2 NC_004065.1 + 127787 0.66 0.929164
Target:  5'- -gCUCCGAC-CGGUa-UGucauGGCCGUg -3'
miRNA:   3'- aaGAGGCUGuGCCGgaACuu--CCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 26892 0.66 0.929164
Target:  5'- ---gCCGGC-CGGUCca-GAGGCCGCu -3'
miRNA:   3'- aagaGGCUGuGCCGGaacUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 21966 0.66 0.923979
Target:  5'- ---gCCGuCGuCGGCaggacggUGAGGGCCGCc -3'
miRNA:   3'- aagaGGCuGU-GCCGga-----ACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 142759 0.66 0.918567
Target:  5'- cUCUCCcgcgacGACgACGGCCUgcUGguGGUgGCg -3'
miRNA:   3'- aAGAGG------CUG-UGCCGGA--ACuuCCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 120584 0.66 0.918567
Target:  5'- -cCUCCGGCGcCGGUCUc---GGCCGg -3'
miRNA:   3'- aaGAGGCUGU-GCCGGAacuuCCGGCg -5'
15741 3' -57.2 NC_004065.1 + 113746 0.66 0.918567
Target:  5'- -aCUCCGGCGaggaGGCCgagGGAcagcgcGGCgGCa -3'
miRNA:   3'- aaGAGGCUGUg---CCGGaa-CUU------CCGgCG- -5'
15741 3' -57.2 NC_004065.1 + 111046 0.66 0.918567
Target:  5'- --gUCUGGCACcGCCguaacGGAGGCgCGCg -3'
miRNA:   3'- aagAGGCUGUGcCGGaa---CUUCCG-GCG- -5'
15741 3' -57.2 NC_004065.1 + 99967 0.66 0.912931
Target:  5'- ---aCCGcCGCGGCgUgcucGGGCCGCg -3'
miRNA:   3'- aagaGGCuGUGCCGgAacu-UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 60733 0.66 0.912931
Target:  5'- cUUCUCguaGACguuACGGaaggaCUUGAggucgAGGCCGCa -3'
miRNA:   3'- -AAGAGg--CUG---UGCCg----GAACU-----UCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 35939 0.66 0.912931
Target:  5'- -gCUCUGuCGCGGCCgc--AGGUCGUc -3'
miRNA:   3'- aaGAGGCuGUGCCGGaacuUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 31081 0.67 0.888164
Target:  5'- -cCUCaUGGCgGCGGCCUU---GGCCGCc -3'
miRNA:   3'- aaGAG-GCUG-UGCCGGAAcuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 191296 0.67 0.886834
Target:  5'- cUCUCUGAgGCGGagcaggauggUGccGGCCGCg -3'
miRNA:   3'- aAGAGGCUgUGCCgga-------ACuuCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 186126 0.67 0.884149
Target:  5'- cUUCcCCGAauaCAgaagaacccugagggUGGCCgUGGAGGCCGCc -3'
miRNA:   3'- -AAGaGGCU---GU---------------GCCGGaACUUCCGGCG- -5'
15741 3' -57.2 NC_004065.1 + 109961 0.68 0.852452
Target:  5'- cUCUCCGGCGCGGUCUccgacgacguccUGgcGcucuggacGCUGCg -3'
miRNA:   3'- aAGAGGCUGUGCCGGA------------ACuuC--------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.