miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 143118 0.66 0.91634
Target:  5'- gCGCGccG-CCGAGggcgagaCCGGCGccGCGACc -3'
miRNA:   3'- gGCGCuaCaGGCUCa------GGCCGU--CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 119661 0.66 0.91634
Target:  5'- gCGCGAgagGUCCcAG-CCGcuGCGGUGGCu -3'
miRNA:   3'- gGCGCUa--CAGGcUCaGGC--CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 141719 0.66 0.91634
Target:  5'- gCGCGAcGaggCCGAGgacgugaacgCCGGCcucaucaacGGCGACg -3'
miRNA:   3'- gGCGCUaCa--GGCUCa---------GGCCG---------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 211506 0.66 0.91634
Target:  5'- aCCGuCGGguucgGcUCUGAGggucgUCGGUGGCGACg -3'
miRNA:   3'- -GGC-GCUa----C-AGGCUCa----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 37411 0.66 0.91634
Target:  5'- aCGCGGUGUCCGA---CGGC-GCGuucACg -3'
miRNA:   3'- gGCGCUACAGGCUcagGCCGuCGC---UG- -5'
15741 5' -58.5 NC_004065.1 + 127108 0.66 0.91634
Target:  5'- uCCGuCGccGUCC-AGUUcucccccaucgCGGCGGCGGCg -3'
miRNA:   3'- -GGC-GCuaCAGGcUCAG-----------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 56251 0.66 0.91634
Target:  5'- gCCG-GAUGUCC----CUGGCGGCGAUc -3'
miRNA:   3'- -GGCgCUACAGGcucaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 21033 0.66 0.912463
Target:  5'- aCCGCGGUGcgagauaauaugcUCCGcGGgcuggaacgucaccaUCCGGCAGCcGAa -3'
miRNA:   3'- -GGCGCUAC-------------AGGC-UC---------------AGGCCGUCG-CUg -5'
15741 5' -58.5 NC_004065.1 + 45286 0.66 0.91077
Target:  5'- uCUGCucgGaaUCCGAG-CCGaGCGGCGACc -3'
miRNA:   3'- -GGCGcuaC--AGGCUCaGGC-CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 60475 0.66 0.91077
Target:  5'- gCGCGcagaaaCCGAGa-CGGCGGCGGCg -3'
miRNA:   3'- gGCGCuaca--GGCUCagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 167413 0.66 0.91077
Target:  5'- gCCGCGGcUG-CUGccgCCGGCGGgGGCg -3'
miRNA:   3'- -GGCGCU-ACaGGCucaGGCCGUCgCUG- -5'
15741 5' -58.5 NC_004065.1 + 130629 0.66 0.910201
Target:  5'- gCUGCGAgcgcaccUGUCgcuCGAGUCgGGaCAGuCGGCg -3'
miRNA:   3'- -GGCGCU-------ACAG---GCUCAGgCC-GUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 153225 0.66 0.909058
Target:  5'- aCgGCGAUGaaCGGugauagcguucgccGUCgCGGCGGCGAUg -3'
miRNA:   3'- -GgCGCUACagGCU--------------CAG-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 160556 0.66 0.904989
Target:  5'- gCCGCGua--CCGcAG-CCGGC-GCGACa -3'
miRNA:   3'- -GGCGCuacaGGC-UCaGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 98367 0.66 0.898998
Target:  5'- gCCGCGAUGUUUuuGUCauacuggGGUGGUGGCg -3'
miRNA:   3'- -GGCGCUACAGGcuCAGg------CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 150889 0.66 0.898998
Target:  5'- uCCaGCGAcgaGUCCGucgggaacaaggGGUCCGaCGGCGGCu -3'
miRNA:   3'- -GG-CGCUa--CAGGC------------UCAGGCcGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 97224 0.66 0.898387
Target:  5'- -gGgGAUGUUCGGggucgcGUCCGGCgcacggcgcuucuGGCGACc -3'
miRNA:   3'- ggCgCUACAGGCU------CAGGCCG-------------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 159804 0.66 0.89716
Target:  5'- gCGCGAUcgucagcaggucucGuUCCGucUCCGGCAGCaGCa -3'
miRNA:   3'- gGCGCUA--------------C-AGGCucAGGCCGUCGcUG- -5'
15741 5' -58.5 NC_004065.1 + 27141 0.66 0.892799
Target:  5'- aCGaCGAg--CCGGGUCCGaGCAacacacgccGCGGCa -3'
miRNA:   3'- gGC-GCUacaGGCUCAGGC-CGU---------CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 75577 0.66 0.892799
Target:  5'- gCCGUGAcGUUCGuGUcgCCGGCGGgGGg -3'
miRNA:   3'- -GGCGCUaCAGGCuCA--GGCCGUCgCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.