miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 1870 0.66 0.892799
Target:  5'- uCUGUGccGUUCcacgGAGUCuCGGCAGCgGACg -3'
miRNA:   3'- -GGCGCuaCAGG----CUCAG-GCCGUCG-CUG- -5'
15741 5' -58.5 NC_004065.1 + 133507 0.66 0.892799
Target:  5'- uCCGCuacgGUCCGAGUC-GGUcgccgagauGGUGACg -3'
miRNA:   3'- -GGCGcua-CAGGCUCAGgCCG---------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 150889 0.66 0.898998
Target:  5'- uCCaGCGAcgaGUCCGucgggaacaaggGGUCCGaCGGCGGCu -3'
miRNA:   3'- -GG-CGCUa--CAGGC------------UCAGGCcGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 64273 0.66 0.892799
Target:  5'- aCGC--UGUCCGAGUUCcuggaaGGC-GCGGCg -3'
miRNA:   3'- gGCGcuACAGGCUCAGG------CCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 143118 0.66 0.91634
Target:  5'- gCGCGccG-CCGAGggcgagaCCGGCGccGCGACc -3'
miRNA:   3'- gGCGCuaCaGGCUCa------GGCCGU--CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 153225 0.66 0.909058
Target:  5'- aCgGCGAUGaaCGGugauagcguucgccGUCgCGGCGGCGAUg -3'
miRNA:   3'- -GgCGCUACagGCU--------------CAG-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 56251 0.66 0.91634
Target:  5'- gCCG-GAUGUCC----CUGGCGGCGAUc -3'
miRNA:   3'- -GGCgCUACAGGcucaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 148623 0.66 0.892799
Target:  5'- uCCaGCGucUGUCUGGacagCGGCAGCGACu -3'
miRNA:   3'- -GG-CGCu-ACAGGCUcag-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 188981 0.67 0.865997
Target:  5'- gCCGCGcgGcCCGAGcUCugCGGCuuCGACg -3'
miRNA:   3'- -GGCGCuaCaGGCUC-AG--GCCGucGCUG- -5'
15741 5' -58.5 NC_004065.1 + 41028 0.67 0.879793
Target:  5'- uCCGUGA-GUCCgucgaagccgcaGAGcucgggCCGcGCGGCGACg -3'
miRNA:   3'- -GGCGCUaCAGG------------CUCa-----GGC-CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 101801 0.67 0.886397
Target:  5'- aUGaUGAUGaCCGAcUUCGGCGGUGGCg -3'
miRNA:   3'- gGC-GCUACaGGCUcAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 186100 0.67 0.851448
Target:  5'- uCCGUGAUGU--GuuUCUGGUGGCGGCg -3'
miRNA:   3'- -GGCGCUACAggCucAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 68529 0.67 0.879793
Target:  5'- cCCG-GAgg-CCGAGga-GGCGGCGGCg -3'
miRNA:   3'- -GGCgCUacaGGCUCaggCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 47873 0.67 0.865997
Target:  5'- gCCGCGGUGUgcuucggugCCGGGUaCCGuaAGUGGu -3'
miRNA:   3'- -GGCGCUACA---------GGCUCA-GGCcgUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 29655 0.67 0.872991
Target:  5'- uCCGuCGAgaacgugGUCaggaaaGAGUCCGGCAGguugcugagccuCGGCg -3'
miRNA:   3'- -GGC-GCUa------CAGg-----CUCAGGCCGUC------------GCUG- -5'
15741 5' -58.5 NC_004065.1 + 130014 0.67 0.865997
Target:  5'- -gGCGAUG-CUGua--CGGCGGCGGCg -3'
miRNA:   3'- ggCGCUACaGGCucagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 155378 0.67 0.875735
Target:  5'- gCCGCGGUccggaccucagacCCGGGUagCGGUGGCGGCg -3'
miRNA:   3'- -GGCGCUAca-----------GGCUCAg-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 83474 0.67 0.872991
Target:  5'- cCCGCGAcG-CCGAcgauGUCgGGCAGgcCGACc -3'
miRNA:   3'- -GGCGCUaCaGGCU----CAGgCCGUC--GCUG- -5'
15741 5' -58.5 NC_004065.1 + 105543 0.67 0.879793
Target:  5'- uCCGCGcgGcCCuGGacCCGGCgcAGCGGCa -3'
miRNA:   3'- -GGCGCuaCaGGcUCa-GGCCG--UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 129565 0.67 0.885745
Target:  5'- gCCGaugcCGGUGuUCCGGGUggagaugCCGGagaAGCGGCa -3'
miRNA:   3'- -GGC----GCUAC-AGGCUCA-------GGCCg--UCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.