miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 29655 0.67 0.872991
Target:  5'- uCCGuCGAgaacgugGUCaggaaaGAGUCCGGCAGguugcugagccuCGGCg -3'
miRNA:   3'- -GGC-GCUa------CAGg-----CUCAGGCCGUC------------GCUG- -5'
15741 5' -58.5 NC_004065.1 + 130014 0.67 0.865997
Target:  5'- -gGCGAUG-CUGua--CGGCGGCGGCg -3'
miRNA:   3'- ggCGCUACaGGCucagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 202592 0.67 0.851448
Target:  5'- aCGCGGUGggaCGGGcagaggCUGGguGCGAUg -3'
miRNA:   3'- gGCGCUACag-GCUCa-----GGCCguCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 47873 0.67 0.865997
Target:  5'- gCCGCGGUGUgcuucggugCCGGGUaCCGuaAGUGGu -3'
miRNA:   3'- -GGCGCUACA---------GGCUCA-GGCcgUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 68529 0.67 0.879793
Target:  5'- cCCG-GAgg-CCGAGga-GGCGGCGGCg -3'
miRNA:   3'- -GGCgCUacaGGCUCaggCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 129565 0.67 0.885745
Target:  5'- gCCGaugcCGGUGuUCCGGGUggagaugCCGGagaAGCGGCa -3'
miRNA:   3'- -GGC----GCUAC-AGGCUCA-------GGCCg--UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 163419 0.67 0.851448
Target:  5'- cCCGCGGcuccggauccUGUCCGcGUCCaucguGCGGCaGGCg -3'
miRNA:   3'- -GGCGCU----------ACAGGCuCAGGc----CGUCG-CUG- -5'
15741 5' -58.5 NC_004065.1 + 104000 0.67 0.865997
Target:  5'- cCUGCGGcaaGaCUGAGUCUGGCGaCGACa -3'
miRNA:   3'- -GGCGCUa--CaGGCUCAGGCCGUcGCUG- -5'
15741 5' -58.5 NC_004065.1 + 43354 0.67 0.85589
Target:  5'- gCCGCGuccccgacacucGUCCGAGUCgacgacguauCGGCGGCccGACc -3'
miRNA:   3'- -GGCGCua----------CAGGCUCAG----------GCCGUCG--CUG- -5'
15741 5' -58.5 NC_004065.1 + 61682 0.67 0.851448
Target:  5'- gCGCGAgggGUCCGcagcgcgucacGUCCGcggcGUAGCGGCg -3'
miRNA:   3'- gGCGCUa--CAGGCu----------CAGGC----CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 17279 0.67 0.872991
Target:  5'- aCCGCcggaGGUGgugUCGGGUgCGGCGGaGACa -3'
miRNA:   3'- -GGCG----CUACa--GGCUCAgGCCGUCgCUG- -5'
15741 5' -58.5 NC_004065.1 + 84093 0.68 0.836188
Target:  5'- uCCGCc--GUCCGuuUCUGGUcGCGACa -3'
miRNA:   3'- -GGCGcuaCAGGCucAGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 1119 0.68 0.836188
Target:  5'- cCCGUGGUGUCUG---UCGGCuGCGAg -3'
miRNA:   3'- -GGCGCUACAGGCucaGGCCGuCGCUg -5'
15741 5' -58.5 NC_004065.1 + 120527 0.68 0.803727
Target:  5'- cUCGaCGAUGUCgaGGGUcuccggugugCCGGCGGCGGu -3'
miRNA:   3'- -GGC-GCUACAGg-CUCA----------GGCCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 59157 0.68 0.828305
Target:  5'- aCgGCGAgaGUCCGA-UCgGGCGcGCGGCg -3'
miRNA:   3'- -GgCGCUa-CAGGCUcAGgCCGU-CGCUG- -5'
15741 5' -58.5 NC_004065.1 + 194077 0.68 0.812068
Target:  5'- gCGCGA-GUCCGAcgaccUgCGGCcGCGACa -3'
miRNA:   3'- gGCGCUaCAGGCUc----AgGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 59757 0.68 0.812068
Target:  5'- aCCGCG-UGgCCGAuGguggCGGCGGCGGCc -3'
miRNA:   3'- -GGCGCuACaGGCU-Cag--GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 146048 0.68 0.812068
Target:  5'- aUCGCGAUGUCCGAGUgUGucaaGGuCGAUc -3'
miRNA:   3'- -GGCGCUACAGGCUCAgGCcg--UC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 48789 0.68 0.828305
Target:  5'- cUCGUGGUGUCCaGGUCCcguccacGCAGcCGGCc -3'
miRNA:   3'- -GGCGCUACAGGcUCAGGc------CGUC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 74640 0.68 0.828305
Target:  5'- aCCGCuacccggGUCUGAgGUCCGGaCcGCGGCg -3'
miRNA:   3'- -GGCGcua----CAGGCU-CAGGCC-GuCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.