Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15741 | 5' | -58.5 | NC_004065.1 | + | 191895 | 0.7 | 0.723295 |
Target: 5'- aUGCGcacgCCGaAGUCCGGC-GCGACg -3' miRNA: 3'- gGCGCuacaGGC-UCAGGCCGuCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 163432 | 0.69 | 0.769044 |
Target: 5'- gCCGCGGUGgCCGccgCCGuGCAGuCGGCc -3' miRNA: 3'- -GGCGCUACaGGCucaGGC-CGUC-GCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 168225 | 0.69 | 0.751018 |
Target: 5'- -aGCGccGUCCGAG-CUGGUAGaUGACg -3' miRNA: 3'- ggCGCuaCAGGCUCaGGCCGUC-GCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 221744 | 0.69 | 0.795246 |
Target: 5'- aCCGCGGccccgaucaGUCCGAugagcagaaagGUCaCGGCcGCGACg -3' miRNA: 3'- -GGCGCUa--------CAGGCU-----------CAG-GCCGuCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 121120 | 0.69 | 0.786634 |
Target: 5'- aCGUaGAUGUCCGAGUgCGaGCAGgagagGACg -3' miRNA: 3'- gGCG-CUACAGGCUCAgGC-CGUCg----CUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 68090 | 0.69 | 0.786634 |
Target: 5'- aCGCGAgcaCCGAGUCgcuaCGGaCGGUGACu -3' miRNA: 3'- gGCGCUacaGGCUCAG----GCC-GUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 173441 | 0.69 | 0.777898 |
Target: 5'- -gGUGAcGUUCGAcGUaCCGGUGGCGGCg -3' miRNA: 3'- ggCGCUaCAGGCU-CA-GGCCGUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 102910 | 0.69 | 0.795246 |
Target: 5'- gCCGCGAUGgggGAGaaCUGGaCGGCGACg -3' miRNA: 3'- -GGCGCUACaggCUCa-GGCC-GUCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 178198 | 0.69 | 0.786634 |
Target: 5'- aCGCGAUGgaucggGAGUCCgccauccgGGCGGCGAa -3' miRNA: 3'- gGCGCUACagg---CUCAGG--------CCGUCGCUg -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 82422 | 0.69 | 0.777898 |
Target: 5'- aCCGCGGUGUU--GGUCUGGUccuGCGAg -3' miRNA: 3'- -GGCGCUACAGgcUCAGGCCGu--CGCUg -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 194295 | 0.69 | 0.798655 |
Target: 5'- aCCGCGAucUGgcgCCGAGUCgccagCGGUAccagucuuccaggucGCGACg -3' miRNA: 3'- -GGCGCU--ACa--GGCUCAG-----GCCGU---------------CGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 120527 | 0.68 | 0.803727 |
Target: 5'- cUCGaCGAUGUCgaGGGUcuccggugugCCGGCGGCGGu -3' miRNA: 3'- -GGC-GCUACAGg-CUCA----------GGCCGUCGCUg -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 10951 | 0.68 | 0.812068 |
Target: 5'- gCGCGaAUGUCCGGuGUCUGGUgcguaauaauAGCGcCa -3' miRNA: 3'- gGCGC-UACAGGCU-CAGGCCG----------UCGCuG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 59157 | 0.68 | 0.828305 |
Target: 5'- aCgGCGAgaGUCCGA-UCgGGCGcGCGGCg -3' miRNA: 3'- -GgCGCUa-CAGGCUcAGgCCGU-CGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 48789 | 0.68 | 0.828305 |
Target: 5'- cUCGUGGUGUCCaGGUCCcguccacGCAGcCGGCc -3' miRNA: 3'- -GGCGCUACAGGcUCAGGc------CGUC-GCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 74640 | 0.68 | 0.828305 |
Target: 5'- aCCGCuacccggGUCUGAgGUCCGGaCcGCGGCg -3' miRNA: 3'- -GGCGcua----CAGGCU-CAGGCC-GuCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 84093 | 0.68 | 0.836188 |
Target: 5'- uCCGCc--GUCCGuuUCUGGUcGCGACa -3' miRNA: 3'- -GGCGcuaCAGGCucAGGCCGuCGCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 48518 | 0.68 | 0.843904 |
Target: 5'- gCCgGCGAUGUugCCGAccaUCUGGUAGaCGGCa -3' miRNA: 3'- -GG-CGCUACA--GGCUc--AGGCCGUC-GCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 160581 | 0.68 | 0.803727 |
Target: 5'- uCUGCGAcacgaUGUCCgucGAGUCCaGCAGguCGGCg -3' miRNA: 3'- -GGCGCU-----ACAGG---CUCAGGcCGUC--GCUG- -5' |
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15741 | 5' | -58.5 | NC_004065.1 | + | 1119 | 0.68 | 0.836188 |
Target: 5'- cCCGUGGUGUCUG---UCGGCuGCGAg -3' miRNA: 3'- -GGCGCUACAGGCucaGGCCGuCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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