miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 160581 0.68 0.803727
Target:  5'- uCUGCGAcacgaUGUCCgucGAGUCCaGCAGguCGGCg -3'
miRNA:   3'- -GGCGCU-----ACAGG---CUCAGGcCGUC--GCUG- -5'
15741 5' -58.5 NC_004065.1 + 66734 0.68 0.803727
Target:  5'- cCCGUGccGUCgGAccCCGGCGGCGuCg -3'
miRNA:   3'- -GGCGCuaCAGgCUcaGGCCGUCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 59757 0.68 0.812068
Target:  5'- aCCGCG-UGgCCGAuGguggCGGCGGCGGCc -3'
miRNA:   3'- -GGCGCuACaGGCU-Cag--GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 194077 0.68 0.812068
Target:  5'- gCGCGA-GUCCGAcgaccUgCGGCcGCGACa -3'
miRNA:   3'- gGCGCUaCAGGCUc----AgGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 168834 0.68 0.815364
Target:  5'- gCCGCGGguccUGgccuacgCCGGGUUCGGCGGUuccaacccgaucuucGACg -3'
miRNA:   3'- -GGCGCU----ACa------GGCUCAGGCCGUCG---------------CUG- -5'
15741 5' -58.5 NC_004065.1 + 65196 0.68 0.81945
Target:  5'- aUCGCGGUuuccUCCucggaaacggccaGAGUgCCGGCGGUGGCg -3'
miRNA:   3'- -GGCGCUAc---AGG-------------CUCA-GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 141610 0.68 0.836188
Target:  5'- gCgGCGGgcUCCGcugCCGGCGGUGGCg -3'
miRNA:   3'- -GgCGCUacAGGCucaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 146048 0.68 0.812068
Target:  5'- aUCGCGAUGUCCGAGUgUGucaaGGuCGAUc -3'
miRNA:   3'- -GGCGCUACAGGCUCAgGCcg--UC-GCUG- -5'
15741 5' -58.5 NC_004065.1 + 97931 0.68 0.836188
Target:  5'- gCCGCGc-GUCCGGcaCCGGC-GUGGCa -3'
miRNA:   3'- -GGCGCuaCAGGCUcaGGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 140679 0.68 0.843904
Target:  5'- cCUGCGGccUGUCgugccuCGAGuUCUGGCAGCG-Cg -3'
miRNA:   3'- -GGCGCU--ACAG------GCUC-AGGCCGUCGCuG- -5'
15741 5' -58.5 NC_004065.1 + 162041 0.68 0.843904
Target:  5'- cCCGCaguacaugGUCCauuccugcggGGGUuucaCCGGCAGCGACu -3'
miRNA:   3'- -GGCGcua-----CAGG----------CUCA----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 17279 0.67 0.872991
Target:  5'- aCCGCcggaGGUGgugUCGGGUgCGGCGGaGACa -3'
miRNA:   3'- -GGCG----CUACa--GGCUCAgGCCGUCgCUG- -5'
15741 5' -58.5 NC_004065.1 + 41028 0.67 0.879793
Target:  5'- uCCGUGA-GUCCgucgaagccgcaGAGcucgggCCGcGCGGCGACg -3'
miRNA:   3'- -GGCGCUaCAGG------------CUCa-----GGC-CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 101801 0.67 0.886397
Target:  5'- aUGaUGAUGaCCGAcUUCGGCGGUGGCg -3'
miRNA:   3'- gGC-GCUACaGGCUcAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 65286 0.67 0.872991
Target:  5'- gCCGCGgcGUCCagaagcaucgacGAGUUCaGCgaGGCGGCg -3'
miRNA:   3'- -GGCGCuaCAGG------------CUCAGGcCG--UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 150405 0.67 0.886397
Target:  5'- cCCGCagcGUCCGcgcgcgcagcgGGUCCGGCcuguccaacaGGUGACa -3'
miRNA:   3'- -GGCGcuaCAGGC-----------UCAGGCCG----------UCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 61682 0.67 0.851448
Target:  5'- gCGCGAgggGUCCGcagcgcgucacGUCCGcggcGUAGCGGCg -3'
miRNA:   3'- gGCGCUa--CAGGCu----------CAGGC----CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 43354 0.67 0.85589
Target:  5'- gCCGCGuccccgacacucGUCCGAGUCgacgacguauCGGCGGCccGACc -3'
miRNA:   3'- -GGCGCua----------CAGGCUCAG----------GCCGUCG--CUG- -5'
15741 5' -58.5 NC_004065.1 + 128548 0.67 0.872991
Target:  5'- -aGUGGUGUggCUGuGUCugcgcccgcagCGGCAGCGACg -3'
miRNA:   3'- ggCGCUACA--GGCuCAG-----------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 148803 0.67 0.886397
Target:  5'- aCGaCGAccggcaGUCCGAGUCCGcGCGGUa-- -3'
miRNA:   3'- gGC-GCUa-----CAGGCUCAGGC-CGUCGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.