miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15741 5' -58.5 NC_004065.1 + 161278 1.1 0.002784
Target:  5'- gCCGCGAUGUCCGAGUCCGGCAGCGACc -3'
miRNA:   3'- -GGCGCUACAGGCUCAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 98126 0.8 0.232653
Target:  5'- gUCGCgGAUGUCCGgagaGGUCUGGCGGUGAUa -3'
miRNA:   3'- -GGCG-CUACAGGC----UCAGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 67659 0.78 0.304539
Target:  5'- uCgGUGAUGUCgGGGagCGGCGGCGGCg -3'
miRNA:   3'- -GgCGCUACAGgCUCagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 142329 0.77 0.332025
Target:  5'- aCCGCGAgGUCuCGAacgCCGGCGGCGAg -3'
miRNA:   3'- -GGCGCUaCAG-GCUca-GGCCGUCGCUg -5'
15741 5' -58.5 NC_004065.1 + 164548 0.76 0.416673
Target:  5'- cUCGCuGUGU-CGAG-CCGGCGGCGGCg -3'
miRNA:   3'- -GGCGcUACAgGCUCaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 44525 0.76 0.416673
Target:  5'- gCGCGAUGUuaCCGGGgaCGGUGGCGGCg -3'
miRNA:   3'- gGCGCUACA--GGCUCagGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 185192 0.75 0.459266
Target:  5'- cCCGUGucgcUGUCCGuGUCgCGGUGGUGGCg -3'
miRNA:   3'- -GGCGCu---ACAGGCuCAG-GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 164350 0.75 0.465413
Target:  5'- gCGCGAUGUCCucgGGcGUCggaucuuccugcggCGGCAGCGGCa -3'
miRNA:   3'- gGCGCUACAGG---CU-CAG--------------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 207990 0.74 0.492226
Target:  5'- aCCGCGGccugcccggggccgUGgCCGGGUuagugCCGGCGGCGAUg -3'
miRNA:   3'- -GGCGCU--------------ACaGGCUCA-----GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 4661 0.74 0.494947
Target:  5'- gCCGCGGgcGUCCaGAGacagaggacUCCGGCGGCgGACa -3'
miRNA:   3'- -GGCGCUa-CAGG-CUC---------AGGCCGUCG-CUG- -5'
15741 5' -58.5 NC_004065.1 + 56111 0.74 0.513256
Target:  5'- gCGCGGUGUauaggaucuaCCGAGUguugaGGCGGCGGCg -3'
miRNA:   3'- gGCGCUACA----------GGCUCAgg---CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 144362 0.74 0.522514
Target:  5'- aCGCGAUGU-CGAcGgcgCUGGCGGUGACg -3'
miRNA:   3'- gGCGCUACAgGCU-Ca--GGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 33289 0.73 0.531836
Target:  5'- aCGcCGAUGUUgGGGUa-GGCGGCGACg -3'
miRNA:   3'- gGC-GCUACAGgCUCAggCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 80302 0.73 0.541217
Target:  5'- aCCGCuauGA-GUCCGAGggCCGGC-GCGGCc -3'
miRNA:   3'- -GGCG---CUaCAGGCUCa-GGCCGuCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 18049 0.73 0.554442
Target:  5'- gCGCGAgg-UCGAGUCugaucucgacgauggCGGCAGCGACc -3'
miRNA:   3'- gGCGCUacaGGCUCAG---------------GCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 65314 0.72 0.57924
Target:  5'- cCCGCG-UGg-UGGGaCCGGCGGCGGCg -3'
miRNA:   3'- -GGCGCuACagGCUCaGGCCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 29592 0.72 0.588843
Target:  5'- gCCGCGGUGaCCGcGGUCCuGCAG-GACu -3'
miRNA:   3'- -GGCGCUACaGGC-UCAGGcCGUCgCUG- -5'
15741 5' -58.5 NC_004065.1 + 35599 0.72 0.588843
Target:  5'- uCgGCGGUGUCggugCGGGaUCCacGGCGGCGGCg -3'
miRNA:   3'- -GgCGCUACAG----GCUC-AGG--CCGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 139582 0.72 0.607163
Target:  5'- aCCGC-AUGUCCaucuacucgaccgGGGUCaCGaGCGGCGACa -3'
miRNA:   3'- -GGCGcUACAGG-------------CUCAG-GC-CGUCGCUG- -5'
15741 5' -58.5 NC_004065.1 + 204003 0.72 0.608129
Target:  5'- gCCGCuGGUGgacgacgCCGAGgccaCGGuCAGCGACg -3'
miRNA:   3'- -GGCG-CUACa------GGCUCag--GCC-GUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.